- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 7 x CD: CADMIUM ION(Non-covalent)
CD.1: 2 residues within 4Å:- Chain A: M.1, E.16
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.16, A:E.16
CD.2: 1 residues within 4Å:- Chain A: E.18
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.18, H2O.3
CD.3: 2 residues within 4Å:- Chain A: E.24, D.52
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.24, A:E.24, A:D.52, H2O.1, H2O.2
CD.4: 1 residues within 4Å:- Chain A: E.64
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.64
CD.5: 2 residues within 4Å:- Chain B: M.1, E.16
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.16, B:E.16
CD.6: 2 residues within 4Å:- Chain B: E.18, D.21
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.18, B:D.21
CD.7: 2 residues within 4Å:- Chain B: E.24, D.52
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.24, B:D.52, H2O.3
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weeks, S.D. et al., Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture. Proteins (2009)
- Release Date
- 2009-09-22
- Peptides
- Ubiquitin: A
Ubiquitin: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 3h7p.1
Crystal structure of K63-linked di-ubiquitin
Ubiquitin
Ubiquitin
Related Entries With Identical Sequence
1aar.1 | 1cmx.1 | 1d3z.1 | 1f9j.1 | 1fxt.1 | 1g6j.1 | 1nbf.1 | 1nbf.2 | 1ogw.1 | 1p3q.1 | 1p3q.2 | 1q5w.1 | 1s1q.1 | 1s1q.2 | 1tbe.1 | 1ubi.1 | 1ubq.1 | 1uzx.1 | 1v80.1 | 1v81.1 | 1wr6.1 | 1wr6.2 | 1wr6.3 | 1wr6.4 | 1wrd.1 | 1wrd.2 | 1xqq.1 | 1yd8.1 | 1yd8.2 | 2ayo.1 more...less...2ayo.2 | 2bgf.1 | 2c7m.1 | 2c7n.1 | 2c7n.2 | 2c7n.3 | 2c7n.4 | 2c7n.5 | 2c7n.6 | 2d3g.1 | 2den.1 | 2dx5.1 | 2fid.1 | 2fif.1 | 2fif.2 | 2fif.3 | 2fuh.1 | 2g45.1 | 2g45.2 | 2gmi.1 | 2hd5.1 | 2hth.1 | 2jf5.1 | 2jri.1 | 2jy6.1 | 2jzz.1 | 2k39.1 | 2k8b.1 | 2k8c.1 | 2kde.1 | 2kdf.1 | 2klg.1 | 2kn5.1 | 2kox.1 | 2ktf.1 | 2kwu.1 | 2kwv.1 | 2l0f.1 | 2l0t.1 | 2l3z.1 | 2lj5.1 | 2lvo.1 | 2lvp.1 | 2lvq.1 | 2lz6.1 | 2mbh.1 | 2mbo.1 | 2mbq.1 | 2mcn.1 | 2mj5.1 | 2mjb.1 | 2mor.1 | 2mro.1 | 2n13.1 | 2n3u.1 | 2n3v.1 | 2n3w.1 | 2nr2.1 | 2o6v.1 | 2o6v.2 | 2o6v.3 | 2oob.1 | 2pe9.1 | 2pea.1 | 2qho.1 | 2qho.2 | 2qho.3 | 2qho.4 | 2rr9.1 | 2wwz.1 | 2wx0.1 | 2wx0.2 | 2wx1.1 | 2xbb.1 | 2xbb.2 | 2xew.1 | 2xew.2 | 2xew.3 | 2xk5.1 | 2z59.1 | 2zcc.1 | 2zcc.2 | 2zcc.3 | 2zcc.4 | 2znv.2 | 2znv.5 | 3a1q.1 | 3a1q.2 | 3a33.1 | 3a9j.1 | 3a9k.1 | 3alb.1 | 3aul.1 | 3eec.1 | 3eec.2 | 3eec.3 | 3eec.4 | 3efu.1 | 3ehv.1 | 3ehv.2 | 3ehv.3 | 3h1u.1 | 3h1u.2 | 3h7s.1 | 3h7s.2 | 3h7s.3 | 3hm3.1 | 3hm3.2 | 3hm3.3 | 3hm3.4 | 3jsv.1 | 3m3j.1 | 3m3j.2 | 3m3j.3 | 3mhs.1 | 3n30.1 | 3n30.2 | 3n32.1 | 3nhe.1 | 3ns8.1 | 3ns8.2 | 3ns8.3 | 3ofi.1 | 3ofi.2 | 3phd.1 | 3tbl.1 | 3tmp.1 | 3tmp.2 | 3tmp.3 | 3tmp.4 | 3ugb.1 | 3vht.1 | 3vuw.1 | 3vuw.2 | 3vuw.3 | 3vux.1 | 3vux.2 | 3vux.3 | 3vuy.1 | 3vuy.2 | 3vuy.3 | 3wwq.1 | 3wwq.2 | 3wwq.3 | 3wwq.4 | 3wxg.1 | 3wxg.2 | 4bbn.1 | 4bos.1 | 4boz.1 | 4boz.2 | 4boz.3 | 4bvu.1 | 4ddg.1 | 4ddg.2 | 4ddi.1 | 4dhj.1 | 4dhj.2 | 4dhj.4 | 4dhj.5 | 4dhz.1 | 4jqw.1 | 4k7s.1 | 4k7s.2 | 4k7s.3 | 4k7u.1 | 4k7u.2 | 4k7u.3 | 4k7w.1 | 4k7w.2 | 4k7w.3 | 4ldt.1 | 4ljo.1 | 4ljp.1 | 4m0w.1 | 4mm3.1 | 4nql.1 | 4s1z.1 | 4s1z.2 | 4s1z.3 | 4s1z.4 | 4s1z.5 | 4s22.1 | 4s22.2 | 4un2.1 | 4wlr.1 | 4wur.1 | 4wzp.1 | 4wzp.2 | 4wzp.3 | 4wzp.4 | 4wzp.5 | 4wzp.6 | 4wzp.7 | 4wzp.8 | 4xkh.1 | 4xkh.2 | 4xkh.3 | 4xof.1 | 4xok.1 | 4xok.2 | 4xok.3 | 4xol.1 | 4xol.2 | 4xyz.1 | 4y1h.1 | 4z9s.1 | 4zux.1 | 4zux.2 | 5a5b.1 | 5ait.1 | 5aiu.1 | 5bz0.1 | 5d0k.1 | 5d0k.2 | 5d0k.3 | 5d0k.4 | 5d0m.1 | 5dfl.1 | 5edv.1 | 5edv.2 | 5edv.3 | 5eya.1 | 5fer.1 | 5gjq.1 | 5go7.1 | 5go8.1 | 5gob.1 | 5goc.1 | 5god.1 | 5gog.1 | 5goh.1 | 5goi.1 | 5goj.1 | 5gok.1 | 5h7s.1 | 5j8p.1 | 5jbv.1 | 5jby.1 | 5jqs.1 | 5jtj.1 | 5jtj.2 | 5jtv.1 | 5jtv.2 | 5jtv.3 | 5jtv.4 | 5jtv.5 | 5jtv.6 | 5jtv.7 | 5k9p.1 | 5kgf.1 | 5kyc.1 | 5kyd.1 | 5kye.1 | 5kye.2 | 5kyf.1 | 5mn9.1 | 5nmc.1 | 5nmc.2 | 5nmc.3 | 5nvg.1 | 5ohl.1 | 5ohl.2 | 5ohl.3 | 5ohl.4 | 5ohl.5 | 5ohl.6 | 5ohl.7 | 5ohp.1 | 5ohv.1 | 5tut.1 | 5txk.1 | 5ujl.1 | 5ujn.1 | 5ulf.1 | 5ulf.2 | 5ulh.1 | 5ulk.1 | 5v1y.1 | 5v1y.2 | 5v1z.1 | 5v1z.2 | 5vey.1 | 5vf0.1 | 5vnz.1 | 5vnz.2 | 5vo0.1 | 5vzm.1 | 5wfi.1 | 5wfi.2 | 5x3m.1 | 5x3n.1 | 5x3o.1 | 5xbo.1 | 5xdp.2 | 5xis.1 | 5xis.2 | 5xit.1 | 5xit.2 | 5xiu.1 | 5xk4.1 | 5xk5.1 | 5xpk.1 | 5xu8.1 | 5xve.1 | 5ydk.1 | 5ydk.2 | 5ydk.3 | 5ydk.4 | 5ymy.1 | 5zbu.2 | 6aqr.1 | 6asr.1 | 6asr.2 | 6b7m.1 | 6b7o.1 | 6djx.1 | 6e2b.1 | 6ftx.1 | 6if1.1 | 6if1.2 | 6isu.1 | 6jb6.1 | 6jb7.1 | 6jma.1 | 6jwi.1 | 6k9p.1 | 6kl4.1 | 6kow.1 | 6kox.1 | 6lp2.1 | 6msb.1 | 6msd.1 | 6mse.1 | 6msg.1 | 6n13.1 | 6nxk.1 | 6nxk.2 | 6oi4.1 | 6oi4.2 | 6p5b.1 | 6q00.1 | 6q01.1 | 6q01.2 | 6qml.1 | 6qml.2 | 6rya.1 | 6rya.2 | 6rya.3 | 6s53.1 | 6s53.2 | 6sqr.1 | 6t9l.1 | 6tbm.1 | 6tnf.1 | 6ttu.1 | 6tuv.1 | 6tuv.2 | 6txb.1 | 6txb.2 | 6ud0.1 | 6v5d.1 | 6vae.1 | 6vaf.1 | 6w9d.1 | 6w9d.2 | 6w9d.3 | 6wjd.1 | 6wtg.1 | 6z7v.1 | 7bbd.1 | 7bbf.1 | 7cap.1 | 7dni.1 | 7dnj.1 | 7f0u.1 | 7f0u.2 | 7f7x.1 | 7jxv.1 | 7keo.1 | 7keo.2 | 7m4m.1 | 7m4m.2 | 7m4n.1 | 7m4n.2 | 7m4o.1 | 7myf.2 | 7npi.1 | 7npi.2 | 7npi.3 | 7npi.4 | 7npi.5 | 7npi.6 | 7npi.7 | 7ojx.1 | 7owd.2 | 7qo4.1 | 7qo5.1 | 7qo6.1 | 7r71.1 | 7uv5.1 | 7uyh.1 | 7w38.1 | 7w39.1 | 7w3a.1 | 7w3b.1 | 7w3c.1 | 7w3f.1 | 7w3g.1 | 7w3h.1 | 7w3i.1 | 7w3j.1 | 7w3k.1 | 7w3m.1 | 7xcr.1 | 7xct.1 | 7xd0.1 | 8b3i.1 | 8c07.1 | 8c83.1 | 8cah.1 | 8cas.1 | 8e7o.1 | 8eaz.1 | 8eaz.2 | 8eb0.1 | 8f1f.1 | 8f1f.2 | 8grm.1 | 8h1t.1 | 8ic9.1 | 8ic9.2 | 8itp.1 | 8itp.2 | 8off.1 | 8pjn.1 | 8pmq.1 | 8rx0.1 | 8svf.1