SMTL ID : 7keo.2 (1 other biounit)

Crystal structure of K29-linked di-ubiquitin in complex with synthetic antigen binding fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-2-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: K.228 Chain B: P.121, L.126, Y.187, G.213 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.228 Hydrogen bonds: B:P.121, B:Y.187, B:G.213 PO4.2: 4 residues within 4Å: Chain D: F.45, A.46, T.66, H.68 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.46 Salt bridges: D:H.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Y. et al., K29-linked ubiquitin signaling regulates proteotoxic stress response and cell cycle. Nat.Chem.Biol. (2021)

Release Date

2021-07-28

Peptides

Synthetic antigen binding fragment, heavy chain: A
Synthetic antigen binding fragment, light chain: B
Ubiquitin: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Synthetic antigen binding fragment, heavy chain

Synthetic antigen binding fragment, light chain

Ubiquitin

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