SMTL ID : 8eaz.2 (1 other biounit)

HOIL-1/E2-Ub/Ub transthiolation complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

hetero-1-1-2-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.52, C.55, C.75, C.78 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.52, A:C.55, A:C.75, A:C.78 ZN.2: 4 residues within 4Å: Chain A: C.70, H.72, C.93, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.70, A:H.72, A:C.93, A:C.102 ZN.3: 4 residues within 4Å: Chain A: C.141, C.146, C.161, C.164 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:C.146, A:C.161, A:C.164 ZN.4: 4 residues within 4Å: Chain A: C.169, C.172, H.176, C.181 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.169, A:C.172, A:H.176, A:C.181 ZN.5: 4 residues within 4Å: Chain A: C.217, C.220, C.235, C.238 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.217, A:C.220, A:C.235, A:C.238 ZN.6: 6 residues within 4Å: Chain A: C.243, C.263, C.265, C.272, C.279 Ligands: ZN.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.243, A:C.263, A:C.272, A:C.279 ZN.7: 5 residues within 4Å: Chain A: C.265, C.272, C.276, C.279 Ligands: ZN.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.265, A:C.272, A:C.276, A:C.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.S. et al., The unifying catalytic mechanism of the RING-between-RING E3 ubiquitin ligase family. Nat Commun (2023)

Release Date

2023-01-18

Peptides

RanBP-type and C3HC4-type zinc finger-containing protein 1: A
Ubiquitin-conjugating enzyme E2 L3: B
Ubiquitin: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

D
H

RanBP-type and C3HC4-type zinc finger-containing protein 1

Ubiquitin-conjugating enzyme E2 L3

Ubiquitin

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