SMTL ID : 5ait.1

A complex of of RNF4-RING domain, UbeV2, Ubc13-Ub (isopeptide crosslink)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.10, C.13, R.25, C.37, C.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.13, A:C.37, A:C.40 ZN.2: 4 residues within 4Å: Chain A: C.32, H.34, C.51, C.54 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.32, A:H.34, A:C.51, A:C.54 ZN.3: 4 residues within 4Å: Chain A: C.75, C.78, C.102, C.105 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.75, A:C.78, A:C.102, A:C.105 ZN.4: 4 residues within 4Å: Chain A: C.97, H.99, C.116, C.119 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:H.99, A:C.116, A:C.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Branigan, E. et al., Structural Basis for the Ring Catalyzed Synthesis of K63 Linked Ubiquitin Chains. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-07-08

Peptides

E3 UBIQUITIN-PROTEIN LIGASE RNF4: A
UBIQUITIN-CONJUGATING ENZYME E2 N: BE
POLYUBIQUITIN-C: CF
UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2: DG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
E

C
C

F
F

D
D

G
G

E3 UBIQUITIN-PROTEIN LIGASE RNF4

UBIQUITIN-CONJUGATING ENZYME E2 N

POLYUBIQUITIN-C

UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2

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