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SMTL ID : 2xk5.1

Crystal structure of K6-linked diubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1:	3 residues within 4Å: Chain A: M.1, Q.2, E.16 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.16, A:E.16
ZN.2:	1 residues within 4Å: Chain A: E.18 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.18, A:E.18
ZN.3:	1 residues within 4Å: Chain A: H.68 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.68
ZN.4:	2 residues within 4Å: Chain A: K.27, D.52 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.52
ZN.5:	3 residues within 4Å: Chain B: E.18, D.21, K.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.18, B:E.18, B:D.21, B:D.21
ZN.6:	1 residues within 4Å: Chain B: D.32 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.32
ZN.7:	2 residues within 4Å: Chain B: T.55, D.58 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.58

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Virdee, S. et al., Engineered Diubiquitin Synthesis Reveals K29-Isopeptide Specificity of an Otu Deubiquitinase. Nat.Chem.Biol. (2010)

Release Date

2010-08-25

Peptides

UBIQUITIN: A
UBIQUITIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

UBIQUITIN

UBIQUITIN

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