SMTL ID : 4jqv.1

HLA-B*18:01 in complex with Epstein-Barr virus BZLF1-derived peptide (residues 173-180)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- GLU- LEU- GLU- ILE- LYS- ARG- TYR: Trans-activator protein BZLF1(Non-covalent)

SER-GLU-LEU-GLU-ILE-LYS-ARG-TYR.1: 29 residues within 4Å: Chain A: Y.7, H.9, S.24, Y.59, N.63, I.66, S.67, T.69, N.70, T.73, Y.74, E.76, S.77, N.80, L.81, Y.84, L.95, R.97, Y.99, S.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167 40 PLIP interactions: 40 interactions with chain A Hydrophobic interactions: A:Y.7, A:I.66, A:T.69, A:T.73, A:L.81, A:L.95, A:Y.99, A:Y.123, A:W.147, A:W.147, A:V.152, A:L.156, A:Y.159 Hydrogen bonds: A:Y.7, A:S.24, A:N.63, A:N.63, A:N.70, A:N.70, A:T.73, A:S.77, A:N.80, A:Y.84, A:R.97, A:Y.99, A:Y.99, A:S.116, A:S.116, A:Q.155 Water bridges: A:S.24, A:R.62, A:S.67, A:S.67, A:T.69, A:K.146, A:Q.155, A:W.167 Salt bridges: A:H.9, A:E.76, A:K.146

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: W.204, R.234, Q.242 Chain B: Y.10, S.11, H.13, P.14 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.242, B:S.11, B:S.11 Salt bridges: A:R.234 Water bridges: B:M.99, B:M.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rist, M.J. et al., HLA Peptide Length Preferences Control CD8+ T Cell Responses. J.Immunol. (2013)

Release Date

2013-06-26

Peptides

HLA class I histocompatibility antigen, B-18 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

HLA class I histocompatibility antigen, B-18 alpha chain

Beta-2-microglobulin

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