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SMTL ID : 4jqx.1

HLA-B*44:03 in complex with Epstein-Barr virus BZLF1-derived peptide (residues 169-180)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

7 residues within 4Å:

Chain A: R.6, F.8, Y.27, D.29, D.30
Chain B: F.56, Y.63

4 PLIP interactions:

2 interactions with chain A, 2 interactions with chain B

Hydrogen bonds: A:D.30, B:Y.63, B:Y.63
Water bridges: A:D.29

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2:	6 residues within 4Å: Chain A: R.14, P.15, G.16, R.17, G.18, E.19 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.16, A:R.17, A:G.18
ACT.3:	9 residues within 4Å: Chain A: W.204, L.206, R.234, Q.242 Chain B: Y.10, S.11, H.13, P.14, R.97 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.11, B:S.11 Water bridges: B:M.99, B:M.99 Hydrophobic interactions: A:L.206 Salt bridges: A:R.234

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Rist, M.J. et al., HLA Peptide Length Preferences Control CD8+ T Cell Responses. J.Immunol. (2013)

Release Date

2013-06-26

Peptides

HLA class I histocompatibility antigen, B-44 alpha chain: A
Beta-2-microglobulin: B
Trans-activator protein BZLF1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HLA class I histocompatibility antigen, B-44 alpha chain

Beta-2-microglobulin

Trans-activator protein BZLF1

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1a1m.1 | 1a1n.1 | 1a1o.1 | 1a6z.1 | 1a6z.2 | 1agb.1 | 1agc.1 | 1agd.1 | 1age.1 | 1agf.1 | 1akj.1 | 1c16.1 | 1c16.2 | 1c16.3 | 1c16.4 | 1c16.5 | 1de4.1 | 1de4.2 | 1e27.1 | 1e28.1 | 1exu.1 | 1hsa.1 | 1hsa.2 | 1hsb.1 | 1m05.1 | 1m05.2 | 1m6o.1 | 1mi5.1 | 1n2r.1 | 1onq.1 more...less...

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