SMTL ID : 4qrr.1

Crystal Structure of HLA B*3501-IPS in complex with a Delta-Beta TCR, clone 12 TCR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ILE- PRO- SER- ILE- ASN- VAL- HIS- HIS- TYR: IPS peptide from CMV, IPSINVHHY(Non-covalent)

ILE-PRO-SER-ILE-ASN-VAL-HIS-HIS-TYR.1: 34 residues within 4Å: Chain A: Y.7, Y.9, Y.59, N.63, I.66, F.67, T.69, N.70, T.73, Y.74, S.77, N.80, L.81, Y.84, R.97, Y.99, S.116, Y.123, T.143, K.146, W.147, A.150, V.152, Q.155, L.156, Y.159, W.167, Y.171 Chain C: S.29, L.94 Chain D: R.53, E.94, Y.97, Y.98 32 PLIP interactions: 26 interactions with chain A, 4 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: A:Y.59, A:I.66, A:I.66, A:F.67, A:F.67, A:Y.74, A:L.81, A:Y.123, A:T.143, A:V.152, D:Y.97, C:L.94, C:L.94 Hydrogen bonds: A:Y.7, A:T.73, A:Y.74, A:S.77, A:N.80, A:Y.84, A:R.97, A:R.97, A:Y.99, A:Y.99, A:S.116, A:Q.155, A:Y.159, A:Y.171, D:E.94, D:Y.98 Salt bridges: A:K.146 pi-Stacking: A:W.147, D:Y.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pellicci, D.G. et al., The molecular bases of delta / alpha beta T cell-mediated antigen recognition. J.Exp.Med. (2014)

Release Date

2014-12-10

Peptides

HLA class I histocompatibility antigen, B-35 alpha chain: A
Beta-2-microglobulin: B
clone12 TCR beta chain: C
clone12 TCR alpha chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

HLA class I histocompatibility antigen, B-35 alpha chain

Beta-2-microglobulin

clone12 TCR beta chain

clone12 TCR alpha chain

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