SMTL ID : 4qru.1

Crystal Structure of HLA B*0801 in complex with ELR_MYM, ELRRKMMYM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- LEU- ARG- ARG- LYS- MET- MET- TYR- MET: 55 kDa immediate-early protein 1(Non-covalent)

GLU-LEU-ARG-ARG-LYS-MET-MET-TYR-MET.1: 32 residues within 4Å: Chain A: Y.7, D.9, F.22, S.24, F.36, Y.59, R.62, N.63, I.66, F.67, N.70, T.73, D.74, S.77, N.80, Y.84, L.95, S.97, Y.99, N.114, Y.116, Y.123, T.143, K.146, W.147, A.150, Q.155, D.156, Y.159, T.163, W.167, Y.171 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:Y.7, A:F.36, A:I.66, A:I.66, A:F.67, A:Y.99, A:T.143, A:Y.159, A:Y.159, A:T.163, A:W.167 Hydrogen bonds: A:Y.7, A:D.9, A:Y.59, A:N.63, A:N.63, A:N.70, A:N.70, A:S.77, A:N.80, A:S.97, A:Y.99, A:Y.99, A:N.114, A:Y.116, A:T.143, A:Y.159, A:Y.171 Water bridges: A:S.97, A:N.114, A:W.147 Salt bridges: A:R.62, A:K.146, A:D.156 pi-Cation interactions: A:Y.99

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: S.92, H.93, D.119 Chain B: I.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.87, A:Q.87, A:D.119 ACT.3: 3 residues within 4Å: Chain A: R.14, R.17 Chain B: D.34 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.14, A:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, C. et al., Molecular imprint of exposure to naturally occurring genetic variants of human cytomegalovirus on the T cell repertoire. Sci Rep (2014)

Release Date

2015-02-04

Peptides

HLA class I histocompatibility antigen, B-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-8 alpha chain

Beta-2-microglobulin

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