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SMTL ID : 5b38.1

KIR3DL1005 in complex with HLA-B57:01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x LEU- SER- SER- PRO- VAL- THR- LYS- SER- PHE: peptide from Ig kappa chain C region(Non-covalent)

LEU-SER-SER-PRO-VAL-THR-LYS-SER-PHE.1:

26 residues within 4Å:

Chain A: M.5, Y.7, Y.9, Y.59, E.63, N.66, M.67, T.73, Y.74, N.77, I.80, Y.84, I.95, Y.99, D.114, Y.123, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171
Chain C: M.165, L.166

24 PLIP interactions:

23 interactions with chain A, 1 interactions with chain C

Hydrophobic interactions: A:Y.59, A:I.80, A:I.95, A:Y.123, A:W.147, A:Q.155, A:W.167
Hydrogen bonds: A:Y.7, A:E.63, A:N.66, A:N.77, A:N.77, A:Y.99, A:Y.99, A:D.114, A:K.146, A:Y.159, A:Y.171
Water bridges: A:E.63, A:E.63, A:S.70, A:T.73, A:W.147, C:Y.200

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2:	4 residues within 4Å: Chain C: N.71, P.91, V.93, Y.183 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.93 Hydrogen bonds: C:N.71, C:Y.183
NAG.3:	4 residues within 4Å: Chain C: H.108, I.120, Q.122, N.158 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.122
NAG.4:	4 residues within 4Å: Chain C: K.250, N.252, T.254, Q.256 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:T.254 Hydrogen bonds: C:N.252, C:T.254, C:T.254, C:Q.256

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Saunders, P.M. et al., Killer cell immunoglobulin-like receptor 3DL1 polymorphism defines distinct hierarchies of HLA class I recognition. J.Exp.Med. (2016)

Release Date

2016-03-30

Peptides

HLA class I histocompatibility antigen, B-57 alpha chain: A
Beta-2-microglobulin: B
Killer cell immunoglobulin-like receptor 3DL1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HLA class I histocompatibility antigen, B-57 alpha chain

Beta-2-microglobulin

Killer cell immunoglobulin-like receptor 3DL1

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1a1m.1 | 1a1n.1 | 1a1o.1 | 1a6z.1 | 1a6z.2 | 1agb.1 | 1agc.1 | 1agd.1 | 1age.1 | 1agf.1 | 1akj.1 | 1c16.1 | 1c16.2 | 1c16.3 | 1c16.4 | 1c16.5 | 1de4.1 | 1de4.2 | 1e27.1 | 1e28.1 | 1exu.1 | 1hsa.1 | 1hsa.2 | 1hsb.1 | 1m05.1 | 1m05.2 | 1m6o.1 | 1mi5.1 | 1n2r.1 | 1onq.1 more...less...

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