SMTL ID : 5ddh.1

Structure of HLA-A2:01 with the 12-mer peptide F12K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: R.6, F.8, Y.27, D.29, D.30 Chain B: Y.63 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.6, B:Y.63, B:Y.63 Water bridges: B:Y.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMurtrey, C. et al., Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove. Elife (2016)

Release Date

2016-07-27

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B
12-mer peptide F12K: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

12-mer peptide F12K

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