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SMTL ID : 5enw.1

Structure of HLA-A2:01 with peptide G9L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY- LEU- LYS- GLU- GLY- ILE- PRO- ALA- LEU: Peptide G9L(Non-covalent)

GLY-LEU-LYS-GLU-GLY-ILE-PRO-ALA-LEU.1:

29 residues within 4Å:

Chain A: M.5, Y.7, F.9, M.45, E.63, R.65, K.66, V.67, H.70, T.73, H.74, D.77, T.80, L.81, Y.84, R.97, Y.99, Y.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171
Ligands: GOL.3

31 PLIP interactions:

31 interactions with chain A

Hydrophobic interactions: A:Y.7, A:F.9, A:K.66, A:V.67, A:D.77, A:L.81, A:Y.99, A:Y.116, A:Y.123, A:W.147, A:V.152, A:L.156, A:Y.159, A:Y.159, A:Y.159
Hydrogen bonds: A:E.63, A:D.77, A:Y.84, A:R.97, A:R.97, A:Y.99, A:T.143, A:Y.159, A:Y.171
Water bridges: A:K.66, A:K.66, A:H.70, A:D.77
Salt bridges: A:R.65, A:K.66, A:K.146

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	6 residues within 4Å: Chain A: R.6, F.8, Y.27, D.29, D.30 Chain B: Y.63 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.6, A:D.30, A:D.30, B:Y.63 Water bridges: A:R.6
GOL.3:	5 residues within 4Å: Chain A: A.158, Y.159, T.163 Ligands: GLY-LEU-LYS-GLU-GLY-ILE-PRO-ALA-LEU.1, GLY-LEU-LYS-GLU-GLY-ILE-PRO-ALA-LEU.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.158, A:T.163 Water bridges: A:K.66, A:K.66
GOL.4:	11 residues within 4Å: Chain A: W.204, R.234, W.244 Chain B: V.9, Y.10, S.11, W.95, D.96, R.97, D.98, M.99 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.11, B:S.11, B:D.96, B:R.97, B:D.98, B:D.98, A:R.234, A:R.234 Water bridges: B:Q.8, A:W.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Remesh, S.G. et al., Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT. J. Biol. Chem. (2017)

Release Date

2016-11-09

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

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