SMTL ID : 5fa3.1

Structure of HLA-A2:01 with peptide G9V

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY- LEU- LEU- PRO- GLU- LEU- PRO- ALA- VAL: G9V(Non-covalent)

GLY-LEU-LEU-PRO-GLU-LEU-PRO-ALA-VAL.1: 25 residues within 4Å: Chain A: M.4, Y.6, F.8, M.44, E.62, K.65, V.66, H.69, T.72, H.73, D.76, T.79, L.80, Y.83, R.96, Y.98, Y.115, T.142, K.145, W.146, V.151, L.155, Y.158, W.166, Y.170 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.6, A:F.8, A:K.65, A:V.66, A:D.76, A:L.80, A:Y.98, A:Y.115, A:T.142, A:W.146, A:V.151, A:Y.158, A:Y.158 Hydrogen bonds: A:E.62, A:D.76, A:R.96, A:R.96, A:Y.98, A:Y.98, A:T.142, A:Y.158, A:Y.170 Water bridges: A:T.79, A:T.79 Salt bridges: A:K.145

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: R.5, F.7, Y.26, D.28, D.29 Chain B: Y.63 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.63 GOL.3: 4 residues within 4Å: Chain A: T.162, E.165, W.166, R.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.169 GOL.4: 11 residues within 4Å: Chain A: W.203, R.233, W.243 Chain B: V.9, Y.10, S.11, W.95, D.96, R.97, D.98, M.99 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.11, B:S.11, B:D.96, B:R.97, B:D.98, A:R.233, A:R.233 Water bridges: B:Q.8, B:V.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Remesh, S.G. et al., Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT. J. Biol. Chem. (2017)

Release Date

2016-12-21

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

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