SMTL ID : 5gr7.1

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide 37-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- TYR- SER- ILE- ILE- PRO- HIS- SER- ILE: MERS-CoV peptide(Non-covalent)

TYR-TYR-SER-ILE-ILE-PRO-HIS-SER-ILE.1: 34 residues within 4Å: Chain A: L.5, Y.7, V.9, F.22, A.24, F.45, Y.59, E.62, Q.63, R.66, S.69, D.70, W.73, F.74, V.76, S.77, T.80, A.81, Y.84, F.95, R.97, F.99, F.116, Y.123, T.143, W.147, A.150, D.152, Y.155, Y.156, Y.159, E.163, W.167, Y.171 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:Y.7, A:V.9, A:A.24, A:F.45, A:Y.59, A:R.66, A:W.73, A:F.74, A:A.81, A:F.95, A:F.116, A:T.143, A:W.147, A:Y.155, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:Q.63, A:Q.63, A:R.66, A:D.70, A:D.70, A:D.70, A:S.77, A:T.80, A:T.80, A:R.97, A:R.97, A:T.143, A:Y.159, A:Y.171, A:Y.171 Water bridges: A:E.58, A:K.146, A:D.152 Salt bridges: A:K.146 pi-Stacking: A:F.99, A:W.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W.J. et al., Protective T Cell Responses Featured by Concordant Recognition of Middle East Respiratory Syndrome Coronavirus-Derived CD8+ T Cell Epitopes and Host MHC. J. Immunol. (2017)

Release Date

2017-06-07

Peptides

H-2 class I histocompatibility antigen, K-D alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, K-D alpha chain

Beta-2-microglobulin

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