SMTL ID : 5grd.1

Crystal structure of 10-mer peptide from EBV in complex with HLA-A1101.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: H.188, M.189, R.273 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.189, A:R.273 Water bridges: A:T.187, A:R.273 GOL.2: 3 residues within 4Å: Chain B: N.83, H.84, V.85 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.84 Water bridges: B:D.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, Z. et al., Dual non-contiguous peptide occupancy of HLA class I evoke antiviral human CD8 T cell response and form neo-epitopes with self-antigens. Sci Rep (2017)

Release Date

2017-08-09

Peptides

HLA class I histocompatibility antigen, A-11 alpha chain: A
Beta-2-microglobulin: B
Epstein Barr Virus, Latent membrane protein 2 epitope: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class I histocompatibility antigen, A-11 alpha chain

Beta-2-microglobulin

Epstein Barr Virus, Latent membrane protein 2 epitope

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