SMTL ID : 5vvp.1

HLA-B*57:03 presenting LSSPVTKSW

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- SER- SER- PRO- VAL- THR- LYS- SER- TRP: LEU-SER-SER-PRO-VAL-THR-LYS-SER-TRP(Non-covalent)

LEU-SER-SER-PRO-VAL-THR-LYS-SER-TRP.1: 27 residues within 4Å: Chain A: M.5, Y.7, Y.9, Y.59, E.63, N.66, M.67, S.70, T.73, Y.74, N.77, I.80, Y.84, I.95, Y.99, A.117, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, L.163, W.167, Y.171 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.59, A:T.73, A:Y.74, A:I.95, A:I.95, A:V.152, A:L.163, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:N.66, A:S.70, A:N.77, A:N.77, A:Y.84, A:Y.99, A:Q.155, A:Q.155, A:Y.171, A:Y.171 Water bridges: A:S.70, A:T.73, A:Y.74, A:Y.74, A:E.76, A:E.76, A:N.114, A:K.146, A:K.146, A:W.147 Salt bridges: A:K.146 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Illing, P.T. et al., HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome. Nat Commun (2018)

Release Date

2018-10-03

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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