SMTL ID : 5vwf.1

HLA-B*58:03 presenting LTVQVARVY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- THR- VAL- GLN- VAL- ALA- ARG- VAL- TYR: Nonamer peptide: LEU-THR-VAL-GLN-VAL-ALA-ARG-VAL-TYR(Non-covalent)

LEU-THR-VAL-GLN-VAL-ALA-ARG-VAL-TYR.1: 26 residues within 4Å: Chain A: Y.7, Y.9, M.45, Y.59, E.63, N.66, M.67, S.70, T.73, N.77, I.80, Y.84, I.95, Y.99, Y.116, Y.123, T.143, K.146, W.147, A.150, V.152, Q.155, L.156, Y.159, W.167, Y.171 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:T.73, A:N.77, A:I.80, A:I.80, A:I.95, A:Y.99, A:Y.123, A:V.152, A:L.156, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:N.66, A:N.77, A:N.77, A:Y.99, A:Y.99, A:T.143, A:Q.155, A:Q.155, A:Y.159, A:Y.171 Water bridges: A:Y.9, A:G.62, A:G.62, A:E.63, A:E.63, A:E.63, A:E.63, A:N.66, A:W.147 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Illing, P.T. et al., HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome. Nat Commun (2018)

Release Date

2018-10-03

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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