SMTL ID : 5vwj.1

HLA-B*58:01 presenting LTVQVARVW

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- THR- VAL- GLN- VAL- ALA- ARG- VAL- TRP: Nonamer peptide: LEU-THR-VAL-GLN-VAL-ALA-ARG-VAL-TRP(Non-covalent)

LEU-THR-VAL-GLN-VAL-ALA-ARG-VAL-TRP.1: 29 residues within 4Å: Chain A: M.5, Y.7, Y.9, Y.59, E.63, N.66, M.67, T.73, Y.74, N.77, I.80, Y.84, I.95, R.97, Y.99, D.114, S.116, A.117, Y.123, W.133, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:N.77, A:I.80, A:I.95, A:I.95, A:Y.99, A:W.147, A:Q.155, A:L.156, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:N.66, A:N.77, A:N.77, A:Y.99, A:Y.99, A:S.116, A:S.116, A:S.116, A:T.143, A:Y.159, A:Y.171 Water bridges: A:E.63, A:R.65, A:R.97, A:R.97, A:W.147, A:W.147 Salt bridges: A:D.114, A:K.146 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Illing, P.T. et al., HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome. Nat Commun (2018)

Release Date

2018-10-03

Peptides

HLA class I histocompatibility antigen, B-58 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-58 alpha chain

Beta-2-microglobulin

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