SMTL ID : 6gmr.1

pVHL:EloB:EloC in complex with (4-(1H-pyrrol-1-yl)phenyl)methanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: M.1, D.2, F.4, R.68 Chain B: R.67 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.2, A:D.2 Salt bridges: A:R.68, B:R.67

1 x F4K: (4-pyrrol-1-ylphenyl)methanol(Non-covalent)

F4K.2: 10 residues within 4Å: Chain D: L.68, R.70, G.77, L.78, E.84, P.104, Y.106, E.110, D.147, L.151 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.68, D:E.84, D:P.104, D:L.151 Hydrogen bonds: D:E.110 pi-Cation interactions: D:R.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain B: E.77 Chain D: R.32, R.111, Q.114 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.32, D:R.111, D:R.111, D:Q.114 Water bridges: D:R.32, D:T.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, X. et al., Surface Probing by Fragment-Based Screening and Computational Methods Identifies Ligandable Pockets on the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase. J. Med. Chem. (2018)

Release Date

2018-08-08

Peptides

Elongin-B: A
Elongin-C: B
Hypoxia inducible factor 1alpha, residues 559-577: C
von Hippel-Lindau disease tumor suppressor: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
H

D
V

Elongin-B

Elongin-C

Hypoxia inducible factor 1alpha, residues 559-577

von Hippel-Lindau disease tumor suppressor

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