SMTL ID : 9h30.1

VHL:ElonginC:ElonginB-PROTAC4 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: N-[5-(1-{2-[4-({[(1S,2R,3S,5S,6S,16E,18E,20R,21S)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl]oxy}carbonyl)phenyl]ethyl}-1H-1,2,3-triazol-4-yl)pentanoyl]-3-methyl-D-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide

01.1: 17 residues within 4Å: Chain A: N.51, R.53, F.60, P.70, W.72, F.75, Y.82, P.83, T.84, L.85, R.91, I.93, H.94, S.95, Y.96, H.99, W.101 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:R.53, A:W.72, A:I.93, A:I.93, A:Y.96, A:W.101 Hydrogen bonds: A:R.53, A:R.53, A:R.91, A:H.94, A:Y.96, A:H.99 Water bridges: A:Y.96 pi-Stacking: A:Y.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maiocchi, A. et al., Effective tubulin degradation by rationally designed Proteolysis Targeting Chimeras. To Be Published

Release Date

2025-10-29

Peptides

von Hippel-Lindau disease tumor suppressor: A
Elongin-C: B
Elongin-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

von Hippel-Lindau disease tumor suppressor

Elongin-C

Elongin-B

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