SMTL ID : 6mwr.1

Recognition of MHC-like molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 2LJ: 1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol(Covalent)

2LJ.1: 13 residues within 4Å: Chain A: Y.8, R.10, S.25, K.44, H.59, Y.63, L.67, W.70, R.95, I.97, Y.153, Q.154, W.157 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:K.44, A:Y.63, A:Y.63 Hydrogen bonds: A:R.10, A:S.25, A:S.25, A:T.35, A:Y.63, A:Y.63, A:W.70, A:R.95, A:R.95, A:Q.154, A:Q.154 pi-Stacking: A:Y.8

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain C: P.129, T.130, I.131, L.133 Chain D: N.134 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:N.134, C:P.129, C:I.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Le Nours, J. et al., A class of gamma delta T cell receptors recognize the underside of the antigen-presenting molecule MR1. Science (2019)

Release Date

2019-12-18

Peptides

Major histocompatibility complex class I-related gene protein: A
Beta-2-microglobulin: B
G7 Gamma chain T cell receptor: C
Delta chain of T cell receptor: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Major histocompatibility complex class I-related gene protein

Beta-2-microglobulin

G7 Gamma chain T cell receptor

Delta chain of T cell receptor

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