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SMTL ID : 9uy3.1

Anamorelin bound growth hormone secretagogue receptor in complex with Gq

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.52 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	9 residues within 4Å: Chain E: R.222, L.227, F.234, L.238, K.308, I.311, F.312, W.315, F.319 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:L.227, E:F.234, E:F.234, E:L.238, E:K.308, E:I.311, E:F.312, E:W.315, E:W.315 Hydrogen bonds: E:R.222, E:R.222
CLR.2:	6 residues within 4Å: Chain E: T.376, Y.379, S.380, R.384, W.387, V.409 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:T.376, E:R.384, E:W.387, E:W.387, E:V.409

1 x 01: 2-azanyl-N-[(2R)-1-[(3S)-3-[dimethylamino(methyl)carbamoyl]-3-(phenylmethyl)piperidin-1-yl]-3-(1H-indol-3-yl)-1-oxidanylidene-propan-2-yl]-2-methyl-propanamide

01.3:

17 residues within 4Å:

Chain E: D.246, R.249, Q.267, S.270, E.271, I.325, L.328, P.347, L.357, M.360, V.361, R.430, F.433, S.448, Q.449, N.452, F.456

16 PLIP interactions:

16 interactions with chain E

Hydrophobic interactions: E:E.271, E:L.328, E:L.357, E:M.360, E:V.361, E:R.430, E:Q.449, E:N.452
Hydrogen bonds: E:R.249, E:R.249, E:Q.267, E:S.270, E:S.270, E:R.430
Salt bridges: E:D.246
pi-Cation interactions: E:R.430

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wang, R.L. et al., Molecular recognition of two approved drugs Macimorelin and Anamorelin by the growth hormone secretagogue receptor. Acta Pharmacol.Sin. (2025)

Release Date

2025-07-02

Peptides

Engineered G-alpha-q subunit: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
NB35: D
Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,human growth hormone secretagogue receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Engineered G-alpha-q subunit

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

NB35

Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,Soluble cytochrome b562,Growth hormone secretagogue receptor type 1,human growth hormone secretagogue receptor

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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