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SMTL ID : 6pbh.1

Crystal Structure of HLA-A*68:01 in complex with NP145-156, a 12 mer influenza peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.1:

3 residues within 4Å:

Chain A: G.2, H.4, Q.181

Ligand excluded by PLIP

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	1 residues within 4Å: Chain A: W.275 No protein-ligand interaction detected (PLIP)
MG.5:	3 residues within 4Å: Chain B: N.17, T.73, E.74 No protein-ligand interaction detected (PLIP)
MG.6:	2 residues within 4Å: Chain B: S.57, K.58 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3:	4 residues within 4Å: Chain A: D.31, P.211, A.212, E.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.212, A:E.213
SO4.4:	2 residues within 4Å: Chain A: W.168, R.171 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.171 Salt bridges: A:R.171

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

van de Sandt, C.E. et al., Challenging immunodominance of influenza-specific CD8+T cell responses restricted by the risk-associated HLA-A*68:01 allomorph. Nat Commun (2019)

Release Date

2019-12-11

Peptides

HLA class I histocompatibility antigen, A-68 alpha chain: A
Beta-2-microglobulin: B
influenza A NP145-156 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HLA class I histocompatibility antigen, A-68 alpha chain

Beta-2-microglobulin

influenza A NP145-156 peptide

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