SMTL ID : 6wkr.1

PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-2-1-2-2-2-2-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain B: P.510, A.513 No protein-ligand interaction detected (PLIP)

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 15 residues within 4Å: Chain E: V.621, A.622, G.623, W.624, M.662, C.663, S.664, F.665, R.685, F.686, N.688, H.689, Y.736, V.737, I.739 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:W.624, E:M.662, E:S.664, E:S.664, E:F.686, E:N.688, E:H.689, E:H.689, E:Y.726

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain G: W.91, C.94, H.110, M.111 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:H.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasinath, V. et al., JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications. Science (2021)

Release Date

2021-02-03

Peptides

Ubiquitin: AQ
Polycomb protein SUZ12: B
Polycomb protein EED: C
Histone-binding protein RBBP4: D
Histone-lysine N-methyltransferase EZH2: E
Protein Jumonji: FR
Zinc finger protein AEBP2: G
Histone H3.2: IM
Histone H4: JN
Histone H2A type 1: KO
Histone H2B 1.1: LP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

Q
F

B
A

C
L

D
N

E
C

F
B

R
E

G
P

I
I

M
O

J
J

N
Q

K
K

O
R

L
M

P
S

Ubiquitin

Polycomb protein SUZ12

Polycomb protein EED

Histone-binding protein RBBP4

Histone-lysine N-methyltransferase EZH2

Protein Jumonji

Zinc finger protein AEBP2

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B 1.1

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