SMTL ID : 7txd.1

Cryo-EM structure of BG505 SOSIP HIV-1 Env trimer in complex with CD4 receptor (D1D2) and broadly neutralizing darpin bnD.9

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-mer
Ligands
2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
8 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
11 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
30 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Glogl, M. et al., Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization. Nat.Struct.Mol.Biol. (2023)
Release Date
2023-04-12
Peptides
Envelope glycoprotein gp120: ACE
Envelope glycoprotein gp41: BDF
T-cell surface glycoprotein CD4: GHI
Broadly neutralizing darpin bnd.9: JKL
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
E
E
B
B
D
D
F
F
G
G
H
H
I
I
J
J
K
K
L
L

Envelope glycoprotein gp120

Toggle Identical (ACE)

Envelope glycoprotein gp41

T-cell surface glycoprotein CD4

Toggle Identical (GHI)

Broadly neutralizing darpin bnd.9

Toggle Identical (JKL)

Related Entries With Identical Sequence

1g9m.1 | 1g9n.1 | 1gc1.1 | 1rzj.1 | 1rzk.1 | 3j70.1 | 4h8w.1 | 4jm2.1 | 4rqs.1 | 4rqs.2 | 4tvp.1 | 4zmj.1 | 5a8h.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyl.1 | 5i8h.1 | 5i8h.2 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1  more...