SMTL ID : 7xf3.1

The structure of HLA-B*1501/BM58-66AF9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- LEU- ILE- GLY- ALA- SER- ILE- CYS- PHE: 9-mer peptide from Matrix protein 1(Non-covalent)

ALA-LEU-ILE-GLY-ALA-SER-ILE-CYS-PHE.1: 28 residues within 4Å: Chain A: Y.7, Y.9, M.45, R.62, E.63, I.66, S.67, T.69, N.70, T.73, Y.74, E.76, S.77, N.80, Y.84, R.97, Y.99, S.116, Y.123, T.143, K.146, W.147, A.150, E.152, W.156, Y.159, W.167, Y.171 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.9, A:I.66, A:T.69, A:Y.74, A:Y.99, A:Y.123, A:A.150, A:E.152, A:W.156, A:W.156, A:Y.159, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:R.62, A:R.62, A:E.63, A:N.70, A:Y.74, A:S.77, A:N.80, A:Y.84, A:Y.99, A:Y.171, A:Y.171 Water bridges: A:N.70, A:N.70, A:T.73, A:W.147, A:E.152, A:E.152, A:E.152 Salt bridges: A:K.146 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Parallel T Cell Immunogenic Regions in Influenza B and A Viruses with Distinct Nuclear Export Signal Functions: The Balance between Viral Life Cycle and Immune Escape. J Immunol. (2023)

Release Date

2023-02-08

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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