SMTL ID : 7yg3.1

Crystal structure of HLA-B*13:01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- GLN- ASP- ILE- LEU- ASP- LEU- TRP- ILE: ARG-GLN-ASP-ILE-LEU-ASP-LEU-TRP-ILE(Non-covalent)

ARG-GLN-ASP-ILE-LEU-ASP-LEU-TRP-ILE.1: 27 residues within 4Å: Chain A: Y.7, Y.9, T.24, M.45, R.62, E.63, I.66, S.67, T.69, N.70, T.73, Y.74, N.77, T.80, Y.84, R.97, Y.99, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, E.163, W.167, Y.171 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.7, A:I.66, A:N.77, A:T.80, A:W.147, A:W.147, A:V.152, A:Q.155, A:L.156, A:Y.159, A:W.167 Hydrogen bonds: A:Y.9, A:R.62, A:E.63, A:S.67, A:N.70, A:N.77, A:N.77, A:Y.84, A:Y.99, A:K.146, A:Y.171, A:Y.171 Water bridges: A:T.73, A:R.97, A:R.97, A:R.97, A:W.147, A:E.163 Salt bridges: A:E.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, H. et al., Functional and structural characteristics of HLA-B*13:01-mediated specific T cells reaction in dapsone-induced drug hypersensitivity. J.Biomed.Sci. (2022)

Release Date

2023-07-26

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

MHC class I antigen

Beta-2-microglobulin

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