SMTL ID : 7zlp.1

Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x JHR: [4-[(2~{S})-2-[2-(4-fluorophenyl)ethanoylamino]-3-[(4-fluorophenyl)methylamino]-3-oxidanylidene-propyl]phenyl] dihydrogen phosphate(Non-covalent)

JHR.1: 15 residues within 4Å: Chain A: V.26, N.27, K.30, R.44, S.46, S.47, T.54, P.63, T.64, N.65, L.66, R.67, I.81, H.120, L.121 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:T.54, A:T.64, A:N.65, A:R.67, A:I.81 Hydrogen bonds: A:S.47, A:T.54, A:T.64, A:N.65, A:N.65, A:N.65 Water bridges: A:R.67 Salt bridges: A:R.44, A:R.67 pi-Cation interactions: A:R.67 Halogen bonds: A:N.27

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: G.22, S.23, M.24, T.25, D.45, S.46, S.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.24, A:D.45, A:S.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramachandran, S. et al., Structure-based design of a phosphotyrosine-masked covalent ligand targeting the E3 ligase SOCS2. Nat Commun (2023)

Release Date

2023-04-26

Peptides

Suppressor of cytokine signaling 2: A
Elongin-B: B
Elongin-C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Suppressor of cytokine signaling 2

Elongin-B

Elongin-C

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