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SMTL ID : 8f5a.1

Crystal Structure of KS1 TCR in complex with HLA-B*57:01-TW10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1:

3 residues within 4Å:

Chain A: R.111, H.113, Q.115

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:Q.115
Water bridges: A:R.111, A:R.111, A:D.114
Salt bridges: A:R.111, A:H.113

1 x NA: SODIUM ION(Non-functional Binders)

NA.2:

2 residues within 4Å:

Chain A: R.83, Y.84

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:R.83, A:R.83
Water bridges: A:Y.84, A:Y.84

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3:	1 residues within 4Å: Chain D: F.43 Ligand excluded by PLIP
CL.4:	5 residues within 4Å: Chain D: T.3, T.5, S.20, C.21, S.22 Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Gras, S., Crystal Structure of KS1 TCR in complex with HLA-B*57:01-TW10. To Be Published

Release Date

2024-05-22

Peptides

heavy chain HLA-B*57:01: A
Beta-2-microglobulin: B
KS1 TCR alpha chain: C
KS1 TCR beta chain: D
TW10 peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

heavy chain HLA-B*57:01

Beta-2-microglobulin

KS1 TCR alpha chain

KS1 TCR beta chain

TW10 peptide

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