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SMTL ID : 8f7m.1

Crystal Structure of HLA-B*57:01-TW10-T242N complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1:

10 residues within 4Å:

Chain A: G.1, H.3, D.29, L.179, Q.180, R.181, A.182, Y.209, P.210, E.264

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:G.1, A:Q.180
Water bridges: A:S.2, A:D.29, A:D.29

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2:	6 residues within 4Å: Chain A: F.36, S.38, P.43, K.68, A.71, R.75 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.36, A:K.68, A:A.71 Salt bridges: A:R.75
ACT.3:	4 residues within 4Å: Chain A: S.92, H.93, D.119 Chain B: I.1 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:Q.2, A:Q.87 Salt bridges: A:H.93

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chatzileontiadou, D.S.M. et al., Crystal Structure of HLA-B*57:01-TW10-T242N complex. To Be Published

Release Date

2024-06-05

Peptides

heavy chain HLA-B*57:01: A
Beta-2-microglobulin: B
T242N peptide (TW10 mutant): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

heavy chain HLA-B*57:01

Beta-2-microglobulin

T242N peptide (TW10 mutant)

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1a1m.1 | 1a1n.1 | 1a1o.1 | 1a6z.1 | 1a6z.2 | 1agb.1 | 1agc.1 | 1agd.1 | 1age.1 | 1agf.1 | 1akj.1 | 1c16.1 | 1c16.2 | 1c16.3 | 1c16.4 | 1c16.5 | 1de4.1 | 1de4.2 | 1e27.1 | 1e28.1 | 1exu.1 | 1hsa.1 | 1hsa.2 | 1hsb.1 | 1m05.1 | 1m05.2 | 1m6o.1 | 1mi5.1 | 1n2r.1 | 1onq.1 more...less...

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