SMTL ID : 8vra.1

Structure of a synthetic antibody in complex with a class I MHC presenting a hapten-peptide conjugate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x MOV: AMG 510 (bound form)

MOV.1: 23 residues within 4Å: Chain A: Q.155, A.158, Y.159, T.163 Chain C: V.3, G.4, C.6 Chain D: Q.89, A.91, S.92, Y.93, K.96, T.97, I.98 Chain E: S.36, H.38, S.53, S.60, S.62, G.102, A.106, A.107, M.108 11 PLIP interactions: 2 interactions with chain C, 3 interactions with chain E, 6 interactions with chain D Hydrophobic interactions: C:V.3, D:Y.93, D:I.98, D:I.98 Hydrogen bonds: C:G.4, E:S.53, E:S.62, D:Y.93 Halogen bonds: E:S.36 pi-Stacking: D:Y.93, D:Y.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maso, L. et al., Molecular basis for antibody recognition of multiple drug-peptide/MHC complexes. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-09-04

Peptides

HLA class I histocompatibility antigen, A alpha chain: A
Beta-2-microglobulin: B
GTPase KRas, N-terminally processed: C
R023 Fab light chain: D
R023 Fab heavy chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

HLA class I histocompatibility antigen, A alpha chain

Beta-2-microglobulin

GTPase KRas, N-terminally processed

R023 Fab light chain

R023 Fab heavy chain

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