SMTL ID : 8xes.1

The structure of HLA-A/L1-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASP- VAL- MET- THR- TYR- ILE- HIS- SER- MET: Major capsid protein L1(Non-covalent)

ASP-VAL-MET-THR-TYR-ILE-HIS-SER-MET.1: 27 residues within 4Å: Chain A: Y.7, Y.9, M.45, R.62, N.63, N.66, H.70, T.73, N.77, T.80, L.81, Y.84, R.97, Y.99, D.116, Y.123, T.143, K.146, W.147, A.150, E.152, Q.155, W.156, Y.159, R.163, W.167, Y.171 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.7, A:N.66, A:L.81, A:Y.99, A:T.143, A:W.156, A:W.156, A:W.167 Hydrogen bonds: A:Y.7, A:N.63, A:N.63, A:N.77, A:N.77, A:Y.99, A:T.143, A:E.152, A:Y.159 Water bridges: A:Y.7, A:N.66 Salt bridges: A:R.62, A:K.146, A:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Uncommon P1 Anchor-featured Viral T Cell Epitope Preference within HLA-A*2601 and HLA-A*0101 Individuals. Immunohorizons (2024)

Release Date

2024-07-10

Peptides

HLA class I heavy chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I heavy chain

Beta-2-microglobulin

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