SMTL ID : 8xfz.1

The structure of HLA-A/L1-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- VAL- ALA- ARG- THR- ASN- ILE- TYR- TYR: Major capsid protein L1(Non-covalent)

TYR-VAL-ALA-ARG-THR-ASN-ILE-TYR-TYR.1: 30 residues within 4Å: Chain A: M.5, Y.7, Y.9, M.45, Y.59, R.62, N.63, N.66, V.67, H.70, T.73, D.74, N.77, T.80, L.81, Y.84, R.97, Y.99, D.116, Y.123, T.143, K.146, W.147, A.150, E.152, Q.155, W.156, Y.159, W.167, Y.171 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:Y.59, A:N.66, A:H.70, A:N.77, A:L.81, A:Y.99, A:Y.123, A:T.143, A:W.147, A:W.147, A:W.156, A:W.156, A:Y.159, A:W.167, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:N.63, A:N.66, A:H.70, A:H.70, A:N.77, A:N.77, A:R.97, A:Y.99, A:T.143, A:E.152, A:E.152, A:Q.155, A:Y.159 Water bridges: A:Y.59, A:E.152, A:E.152 Salt bridges: A:K.146 pi-Stacking: A:W.147 pi-Cation interactions: A:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Uncommon P1 Anchor-featured Viral T Cell Epitope Preference within HLA-A*2601 and HLA-A*0101 Individuals. Immunohorizons (2024)

Release Date

2024-07-10

Peptides

HLA class I heavy chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I heavy chain

Beta-2-microglobulin

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