SMTL ID : 8xkc.1

The structure of HLA-A/Pep16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CYS- VAL- ALA- ASP- TYR- SER- VAL- LEU- TYR: Spike protein S1(Non-covalent)

CYS-VAL-ALA-ASP-TYR-SER-VAL-LEU-TYR.1: 24 residues within 4Å: Chain A: Y.7, Y.9, M.45, Y.59, N.63, N.66, H.70, T.73, N.77, L.81, Y.84, I.95, R.97, Y.99, Q.114, D.116, T.143, K.146, W.147, W.156, Y.159, R.163, W.167, Y.171 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:Y.7, A:N.66, A:T.73, A:N.77, A:L.81, A:L.81, A:T.143, A:W.147, A:W.156, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.7, A:Y.59, A:N.63, A:N.66, A:N.66, A:T.73, A:T.73, A:N.77, A:N.77, A:Y.84, A:R.97, A:Y.99, A:Y.99, A:D.116, A:D.116, A:R.163, A:Y.171, A:Y.171 Water bridges: A:N.77 Salt bridges: A:R.62, A:K.146, A:R.163 pi-Stacking: A:W.156, A:W.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Uncommon P1 Anchor-featured Viral T Cell Epitope Preference within HLA-A*2601 and HLA-A*0101 Individuals. Immunohorizons (2024)

Release Date

2024-07-10

Peptides

HLA class I heavy chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I heavy chain

Beta-2-microglobulin

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