SMTL ID : 8z05.1

The structure of HLA-A*0201 complex with peptide from SARS-CoV-2 N222-230 LLLDRLNKL(BA.2.86/JN.1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- LEU- LEU- ASP- ARG- LEU- ASN- LYS- LEU: Spike protein S2'(Non-covalent)

LEU-LEU-LEU-ASP-ARG-LEU-ASN-LYS-LEU.1: 27 residues within 4Å: Chain A: M.5, Y.7, F.9, M.45, Y.59, E.63, K.66, V.67, H.70, T.73, H.74, D.77, L.81, Y.84, R.97, Y.99, Y.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.7, A:F.9, A:Y.59, A:V.67, A:T.73, A:L.81, A:Y.116, A:T.143, A:W.147, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:K.66, A:D.77, A:Y.99, A:T.143, A:Q.155, A:Q.155, A:Y.159, A:Y.171 Water bridges: A:K.66, A:T.80, A:R.97, A:R.97 Salt bridges: A:R.65, A:K.66, A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, J. et al., T cell immune evasion by SARS-CoV-2 JN.1 escapees targeting two cytotoxic T cell epitope hotspots. Nat.Immunol. (2025)

Release Date

2025-01-29

Peptides

HLA class I histocompatibility antigen, A alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, A alpha chain

Beta-2-microglobulin

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