SMTL ID : 1n5u.1

X-RAY STUDY OF HUMAN SERUM ALBUMIN COMPLEXED WITH HEME

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

5 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 13 residues within 4Å: Chain A: L.22, V.23, L.66, F.70, Y.150, P.152, L.251, A.254, R.257, A.258, L.283, L.284, S.287 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.22, A:V.23, A:V.23, A:F.70, A:L.251, A:A.254, A:L.283, A:L.284 Hydrogen bonds: A:L.283, A:S.287 Water bridges: A:S.287, A:S.287, A:H.288 Salt bridges: A:R.257 MYR.2: 15 residues within 4Å: Chain A: S.342, V.344, R.348, L.387, I.388, N.391, F.403, L.407, L.430, V.433, G.434, M.446, E.450, R.485 Ligands: MYR.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.344, A:L.387, A:L.387, A:I.388, A:N.391, A:F.403, A:L.407, A:L.430, A:V.433, A:E.450 Hydrogen bonds: A:S.342, A:S.342, A:L.345 Water bridges: A:R.485 Salt bridges: A:R.348, A:R.485 MYR.3: 16 residues within 4Å: Chain A: L.387, N.391, R.410, Y.411, V.415, V.418, T.422, L.423, V.426, L.430, L.453, L.457, L.460, F.488, S.489 Ligands: MYR.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:V.418, A:V.418, A:T.422, A:L.423, A:L.430, A:L.453, A:L.460, A:L.460, A:F.488, A:F.488 Hydrogen bonds: A:N.391, A:Y.411 Water bridges: A:R.410 Salt bridges: A:R.410 MYR.4: 14 residues within 4Å: Chain A: Y.401, N.405, F.502, F.507, F.509, K.525, A.528, L.529, V.547, M.548, F.551, A.552, L.575, S.579 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.401, A:F.502, A:F.507, A:F.507, A:F.509, A:K.525, A:A.528, A:M.548, A:F.551, A:F.551, A:L.575 Hydrogen bonds: A:Y.401 Salt bridges: A:K.525 MYR.5: 12 residues within 4Å: Chain A: R.209, A.210, A.213, V.216, S.232, V.235, D.324, G.328, A.350, E.354, S.480, V.482 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.213, A:V.216, A:V.235, A:A.350 Hydrogen bonds: A:S.480 Water bridges: A:R.209

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.6: 21 residues within 4Å: Chain A: R.114, L.115, R.117, P.118, M.123, F.134, L.135, Y.138, L.139, I.142, H.146, F.149, L.154, F.157, A.158, Y.161, F.165, R.186, G.189, K.190, S.193 30 PLIP interactions: 30 interactions with chain A, Hydrophobic interactions: A:F.134, A:F.134, A:Y.138, A:Y.138, A:Y.138, A:Y.138, A:Y.138, A:L.139, A:I.142, A:I.142, A:F.149, A:F.157, A:A.158, A:Y.161, A:F.165, A:F.165, A:R.186, A:K.190 Hydrogen bonds: A:G.189, A:S.193 Water bridges: A:L.115, A:K.190, A:K.190 Salt bridges: A:R.114, A:H.146, A:K.190, A:K.190 pi-Stacking: A:Y.161, A:Y.161 Metal complexes: A:Y.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wardell, M. et al., The Atomic Structure of Human Methemalbumin at 1.9 A. Biochem.Biophys.Res.Commun. (2002)

Release Date

2003-06-24

Peptides

SERUM ALBUMIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERUM ALBUMIN

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