SMTL ID : 6wuw.2 (1 other biounit)

Crystal structure of Human Serum Albumin complex with JMS-053

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.199, S.202, F.211, W.214 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.202 EDO.8: 2 residues within 4Å: Chain A: H.3, H.9 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.9

5 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 14 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, I.388, N.391, F.403, L.407, L.430, V.433, G.434, E.450, L.453, R.485 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.344, A:N.391, A:F.403, A:L.407, A:V.433, A:E.450, A:L.453 Hydrogen bonds: A:S.342 Salt bridges: A:R.348, A:R.485 MYR.4: 13 residues within 4Å: Chain A: R.10, L.14, F.19, V.23, Y.150, P.152, L.251, A.254, R.257, A.258, L.283, L.284, S.287 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.14, A:F.19, A:F.19, A:V.23, A:L.251, A:A.254, A:R.257, A:A.258, A:L.283, A:L.284 Hydrogen bonds: A:Y.150, A:S.287, A:S.287 Water bridges: A:H.288, A:H.288 Salt bridges: A:R.257 MYR.5: 8 residues within 4Å: Chain A: R.209, A.213, D.324, L.327, G.328, A.350, K.351, S.480 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.213, A:L.327, A:A.350, A:K.351 MYR.9: 7 residues within 4Å: Chain A: Y.411, V.415, L.430, L.460, R.485, F.488, S.489 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:V.415, A:L.430, A:F.488, A:F.488 MYR.10: 10 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, V.547, M.548, F.551, A.552, S.579, Q.580 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.507, A:K.525, A:V.547, A:F.551, A:F.551, A:Q.580 Hydrogen bonds: A:M.548 Salt bridges: A:K.525

1 x UAY: 7-imino-2-phenylthieno[3,2-c]pyridine-4,6(5H,7H)-dione(Non-covalent)

UAY.3: 10 residues within 4Å: Chain A: L.115, I.142, F.149, L.154, F.157, Y.161, R.186, G.189, K.190 Ligands: UNL.7 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.142, A:I.142, A:F.149, A:F.149, A:L.154, A:F.157 Hydrogen bonds: A:K.190 Water bridges: A:L.115, A:L.115, A:R.117, A:Y.161 pi-Stacking: A:F.157

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 9 residues within 4Å: Chain A: K.199, W.214, L.219, L.238, H.242, R.257, S.287, I.290, A.291 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.199, A:K.199

1 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.7: 12 residues within 4Å: Chain A: R.117, M.123, L.135, Y.138, L.139, I.142, L.154, A.158, Y.161, F.165, R.186 Ligands: UAY.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czub, M.P. et al., Structure of the Complex of an Iminopyridinedione Protein Tyrosine Phosphatase 4A3 Phosphatase Inhibitor with Human Serum Albumin. Mol.Pharmacol. (2020)

Release Date

2020-05-20

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serum albumin

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