SMTL ID : 3a73.1 (1 other biounit)

Crystal Structure Analysis of Human serum albumin complexed with delta 12-prostaglandin J2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

6 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 14 residues within 4Å: Chain A: L.14, L.22, A.26, F.70, Y.150, P.152, L.250, L.251, A.254, R.257, A.258, L.283, L.284, S.287 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.14, A:L.22, A:A.26, A:F.70, A:F.70, A:L.250, A:A.254, A:L.284 Hydrogen bonds: A:L.283, A:S.287, A:S.287 Water bridges: A:H.288 Salt bridges: A:R.257 MYR.2: 11 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, I.388, N.391, C.392, V.433, G.434, C.438, R.485 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.388, A:V.433 Hydrogen bonds: A:S.342, A:S.342 Salt bridges: A:R.348, A:R.485 MYR.3: 10 residues within 4Å: Chain A: Y.411, V.415, V.418, V.426, L.430, L.453, L.457, L.460, F.488, S.489 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:Y.411, A:V.415, A:V.418, A:V.426, A:L.430, A:L.453, A:L.460, A:F.488 Hydrogen bonds: A:Y.411, A:S.489 Salt bridges: A:R.410, A:K.414 MYR.4: 9 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, A.528, M.548, F.551, A.552, S.579 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.507, A:F.507, A:K.525, A:A.528, A:F.551, A:F.551, A:F.551 Hydrogen bonds: A:Y.401 Salt bridges: A:K.525 MYR.5: 9 residues within 4Å: Chain A: R.209, A.210, A.213, V.216, D.324, G.328, A.350, K.351, V.482 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.210, A:A.213, A:D.324, A:A.350, A:K.351, A:V.482 MYR.6: 9 residues within 4Å: Chain A: R.218, L.219, R.222, F.223, V.241, R.257, S.287, I.290, A.291 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.218, A:L.219, A:R.222, A:F.223, A:V.241, A:I.290

2 x PJ2: (5Z,12Z,15S)-15-hydroxy-11-oxoprosta-5,9,12-trien-1-oic acid(Non-covalent)(Covalent)

PJ2.7: 12 residues within 4Å: Chain A: L.115, M.123, F.134, L.135, Y.138, L.139, I.142, A.158, Y.161, F.165, G.189 Ligands: PJ2.8 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.115, A:Y.138, A:Y.138, A:Y.138, A:L.139, A:I.142, A:I.142, A:A.158, A:Y.161, A:Y.161, A:Y.161, A:Y.161 Hydrogen bonds: A:L.139, A:Y.161 PJ2.8: 4 residues within 4Å: Chain A: R.114, L.115, H.146 Ligands: PJ2.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.114 Hydrogen bonds: A:L.115, A:L.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamaguchi, S. et al., Delta12-prostaglandin J2 as a product and ligand of human serum albumin: formation of an unusual covalent adduct at His146. J.Am.Chem.Soc. (2010)

Release Date

2010-01-19

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

Related Entries With Identical Sequence