SMTL ID : 3a73.2 (1 other biounit)

Crystal Structure Analysis of Human serum albumin complexed with delta 12-prostaglandin J2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

6 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 11 residues within 4Å: Chain A: L.22, V.23, L.66, Y.150, P.152, L.251, A.254, R.257, A.258, L.284, S.287 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.22, A:L.22, A:V.23, A:L.66, A:L.251 Hydrogen bonds: A:L.283, A:S.287 Water bridges: A:H.288, A:H.288 Salt bridges: A:R.257 MYR.2: 11 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, L.387, N.391, V.433, A.449, E.450, L.453, R.485 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.344, A:P.384, A:L.387, A:V.433, A:A.449, A:L.453 Hydrogen bonds: A:S.342, A:S.342 Water bridges: A:R.485 Salt bridges: A:R.348, A:R.485 MYR.3: 10 residues within 4Å: Chain A: L.387, R.410, Y.411, V.415, V.418, L.430, L.460, V.473, F.488, S.489 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:V.418, A:L.430, A:L.460, A:L.460, A:V.473, A:F.488 Hydrogen bonds: A:S.489 Salt bridges: A:R.410 MYR.4: 10 residues within 4Å: Chain A: Y.401, F.507, K.525, L.532, V.547, M.548, F.551, A.552, V.576, S.579 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.507, A:F.507, A:F.507, A:K.525, A:V.547, A:F.551, A:F.551, A:F.551, A:V.576 Hydrogen bonds: A:Y.401, A:Y.401 Salt bridges: A:K.525 MYR.5: 11 residues within 4Å: Chain A: R.209, A.210, K.212, V.216, L.327, G.328, L.347, A.350, K.351, L.481, V.482 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.210, A:L.327, A:L.347, A:A.350, A:L.481, A:V.482 Water bridges: A:D.324 MYR.6: 7 residues within 4Å: Chain A: R.222, V.241, L.260, I.264, S.287, I.290, A.291 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.241, A:L.260, A:I.264, A:I.290, A:A.291

1 x PJ2: (5Z,12Z,15S)-15-hydroxy-11-oxoprosta-5,9,12-trien-1-oic acid(Non-covalent)

PJ2.7: 9 residues within 4Å: Chain A: R.117, M.123, Y.138, I.142, A.158, Y.161, F.165, L.182, R.186 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.117, A:Y.138, A:Y.138, A:Y.138, A:A.158, A:Y.161, A:Y.161, A:F.165 Salt bridges: A:H.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamaguchi, S. et al., Delta12-prostaglandin J2 as a product and ligand of human serum albumin: formation of an unusual covalent adduct at His146. J.Am.Chem.Soc. (2010)

Release Date

2010-01-19

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serum albumin

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