SMTL ID : 3tdl.1

Structure of human serum albumin in complex with DAUDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 15 residues within 4Å: Chain A: R.10, L.14, F.19, L.22, V.23, L.66, Y.150, P.152, L.250, L.251, A.254, R.257, L.283, L.284, S.287 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.14, A:L.14, A:F.19, A:V.23, A:L.66, A:L.66, A:P.152, A:L.250, A:L.250, A:A.254, A:L.283 Hydrogen bonds: A:L.284, A:S.287 Salt bridges: A:R.257 MYR.2: 14 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, L.387, I.388, N.391, Y.411, L.430, G.434, A.449, E.450, R.485 Ligands: MYR.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.384, A:L.387, A:I.388, A:N.391, A:L.430, A:A.449, A:E.450 Hydrogen bonds: A:S.342, A:S.342 Salt bridges: A:R.348, A:R.485 MYR.3: 10 residues within 4Å: Chain A: Y.411, V.415, V.426, L.430, L.453, L.457, L.460, F.488, S.489 Ligands: MYR.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:Y.411, A:V.415, A:V.426, A:L.430, A:L.453, A:L.457, A:L.460, A:F.488 MYR.4: 13 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, A.528, L.529, L.532, M.548, F.551, A.552, L.575, V.576, S.579 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.525, A:A.528, A:L.529, A:L.532, A:F.551, A:L.575 Hydrogen bonds: A:Y.401 Salt bridges: A:K.525

2 x 11D: 11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid(Non-covalent)

11D.5: 13 residues within 4Å: Chain A: R.209, K.212, A.213, V.216, D.324, V.325, L.327, G.328, L.347, A.350, K.351, S.480, V.482 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.209, A:K.212, A:D.324, A:V.325, A:L.327, A:A.350, A:K.351, A:K.351 Hydrogen bonds: A:D.324, A:S.480 pi-Cation interactions: A:K.212, A:K.212 11D.6: 17 residues within 4Å: Chain A: K.199, F.211, W.214, A.215, R.218, L.219, R.222, F.223, L.238, V.241, H.242, R.257, L.260, I.264, S.287, I.290, A.291 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.214, A:R.218, A:L.219, A:F.223, A:L.238, A:L.260, A:I.264, A:I.290 Hydrogen bonds: A:R.218, A:R.222 Salt bridges: A:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., A fluorescent fatty acid probe, DAUDA, selectively displaces two myristates bound in human serum albumin. Protein Sci. (2011)

Release Date

2012-06-27

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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