SMTL ID : 8cks.1

Crystal structure of Human Serum Albumin in complex with FESAN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x UZC: 3,3'-commo-bis(1,2-dicarba-3-ferra-closo-dodecaborane)(Non-covalent)

UZC.1: 9 residues within 4Å: Chain A: R.117, P.118, M.123, F.134, K.137, Y.138, E.141, F.165, L.182 No protein-ligand interaction detected (PLIP)

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: K.93, E.97, C.101, Q.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.104 DMS.9: 5 residues within 4Å: Chain A: L.198, W.214, V.344, E.450, S.454 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.454 Salt bridges: A:E.450

3 x MYR: MYRISTIC ACID(Non-covalent)

MYR.3: 17 residues within 4Å: Chain A: S.342, P.384, L.387, I.388, N.391, F.403, L.430, V.433, G.434, C.438, M.446, A.449, E.450, L.453, R.485 Ligands: MYR.4, SO4.13 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.384, A:I.388, A:F.403, A:V.433, A:V.433, A:L.453 MYR.4: 9 residues within 4Å: Chain A: R.410, Y.411, K.414, V.415, L.457, F.488, S.489, L.491 Ligands: MYR.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:Y.411, A:Y.411, A:V.415, A:L.457, A:F.488, A:L.491 Water bridges: A:K.414 Salt bridges: A:R.410, A:K.414 MYR.5: 6 residues within 4Å: Chain A: F.509, R.521, K.525, F.551, V.555, E.556 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.509, A:K.525, A:F.551, A:V.555 Salt bridges: A:K.560

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: N.405, V.409, L.529, K.541, L.544, K.545, M.548 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.405, A:K.541, A:L.544

3 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Non-covalent)

OCA.7: 7 residues within 4Å: Chain A: R.209, A.213, L.327, G.328, K.351, E.354 Ligands: SO4.14 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.209, A:L.327, A:L.327 OCA.8: 7 residues within 4Å: Chain A: D.187, A.191, K.432, Y.452, V.455, V.456, Q.459 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:D.187, A:A.191, A:K.432, A:Y.452, A:Y.452, A:V.455, A:V.456 OCA.10: 4 residues within 4Å: Chain A: F.19, L.69, F.70, L.251 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.19, A:L.251

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 5 residues within 4Å: Chain A: R.186, R.428, K.432, K.519, I.523 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.186, A:D.187 Salt bridges: A:R.186, A:R.428, A:K.432, A:K.519 SO4.12: 5 residues within 4Å: Chain A: Q.417, S.470, D.471, R.472, D.494 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.470, A:D.471, A:R.472 Salt bridges: A:R.472 SO4.13: 7 residues within 4Å: Chain A: S.342, V.344, L.345, R.348, P.384, R.485 Ligands: MYR.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.342, A:L.345 Salt bridges: A:R.348, A:R.485 SO4.14: 5 residues within 4Å: Chain A: V.216, F.228, S.232, G.328 Ligands: OCA.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaniowski, D. et al., Structure of Human Serum Albumin in complex with FESAN. To Be Published

Release Date

2023-03-01

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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