SMTL ID : 4l8u.1

X-ray study of human serum albumin complexed with 9 amino camptothecin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

5 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 12 residues within 4Å: Chain A: R.10, L.14, V.23, Y.150, P.152, L.251, A.254, R.257, A.258, L.283, L.284, S.287 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.14, A:P.152, A:L.251, A:A.258, A:L.284 Hydrogen bonds: A:L.283, A:S.287, A:S.287 Water bridges: A:R.257, A:K.286, A:H.288 Salt bridges: A:R.257 MYR.2: 15 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, L.387, I.388, L.407, Y.411, L.430, V.433, A.449, E.450, L.453, R.485 Ligands: MYR.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.344, A:P.384, A:L.387, A:I.388, A:L.407, A:L.430, A:V.433, A:A.449, A:E.450 Hydrogen bonds: A:S.342, A:S.342 Salt bridges: A:R.348, A:R.485 MYR.3: 11 residues within 4Å: Chain A: L.387, N.391, R.410, Y.411, V.418, L.423, L.457, L.460, F.488, S.489 Ligands: MYR.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:V.418, A:L.423, A:L.460, A:L.460, A:F.488, A:F.488 Hydrogen bonds: A:N.391, A:Y.411 Water bridges: A:R.410 Salt bridges: A:R.410 MYR.4: 10 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, A.528, L.529, L.532, V.547, F.551, S.579 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.507, A:K.525, A:A.528, A:V.547, A:F.551, A:F.551 Hydrogen bonds: A:Y.401 Salt bridges: A:K.525 MYR.5: 8 residues within 4Å: Chain A: A.210, A.213, S.232, D.324, L.327, A.350, S.480, V.482 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.324, A:L.327, A:A.350 Hydrogen bonds: A:S.480 Water bridges: A:R.209

1 x 9AZ: (2S)-2-[1-amino-8-(hydroxymethyl)-9-oxo-9,11-dihydroindolizino[1,2-b]quinolin-7-yl]-2-hydroxybutanoic acid(Non-covalent)

9AZ.6: 11 residues within 4Å: Chain A: L.115, R.117, Y.138, I.142, H.146, F.149, L.182, R.186, G.189, K.190, S.193 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.115, A:Y.138, A:I.142, A:I.142 Hydrogen bonds: A:H.146, A:R.186 Water bridges: A:L.115, A:R.186 Salt bridges: A:R.117, A:R.186 pi-Stacking: A:F.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z.M. et al., Structural studies of several clinically important oncology drugs in complex with human serum albumin. Biochim.Biophys.Acta (2013)

Release Date

2013-07-24

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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