SMTL ID : 4lb9.1

X-ray study of human serum albumin complexed with etoposide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

4 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 12 residues within 4Å: Chain A: L.14, L.22, V.23, L.66, F.70, Y.150, L.251, A.254, R.257, L.283, L.284, S.287 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.14, A:L.22, A:V.23, A:L.66, A:F.70, A:L.251, A:A.254, A:L.284 Hydrogen bonds: A:Y.150, A:L.283, A:S.287, A:S.287 Water bridges: A:R.257, A:H.288 Salt bridges: A:R.257 MYR.2: 11 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, L.387, I.388, N.391, L.430, L.453, R.485 Ligands: MYR.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.344, A:L.387, A:I.388, A:L.430, A:L.453 Hydrogen bonds: A:S.342 Salt bridges: A:R.348, A:R.485 MYR.3: 15 residues within 4Å: Chain A: L.387, N.391, R.410, Y.411, V.415, V.426, L.430, L.453, L.457, L.460, V.473, F.488, S.489, L.491 Ligands: MYR.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:Y.411, A:V.415, A:V.426, A:L.430, A:L.453, A:L.457, A:L.460, A:V.473, A:F.488, A:F.488, A:L.491 Hydrogen bonds: A:N.391, A:R.410, A:S.489 MYR.4: 10 residues within 4Å: Chain A: Y.401, F.502, F.507, K.525, A.528, L.529, L.532, V.547, F.551, L.575 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.502, A:F.507, A:A.528, A:L.532, A:V.547, A:F.551, A:F.551, A:L.575 Hydrogen bonds: A:Y.401 Salt bridges: A:K.525

1 x EVP: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside(Non-covalent)

EVP.5: 11 residues within 4Å: Chain A: D.108, H.146, Y.148, S.193, R.197, C.200, A.201, Q.204, C.246, H.247, G.248 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.193, A:R.197, A:Q.204, A:H.247 Water bridges: A:D.108, A:D.108 Salt bridges: A:R.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z.M. et al., Structural studies of several clinically important oncology drugs in complex with human serum albumin. Biochim.Biophys.Acta (2013)

Release Date

2013-07-24

Peptides

SERUM ALBUMIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERUM ALBUMIN

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