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SMTL ID : 4lb9.1
X-ray study of human serum albumin complexed with etoposide
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.70 Å
Oligo State
monomer
Ligands
4 x
MYR
:
MYRISTIC ACID
(Non-covalent)
MYR.1:
12 residues within 4Å:
Chain A:
L.14
,
L.22
,
V.23
,
L.66
,
F.70
,
Y.150
,
L.251
,
A.254
,
R.257
,
L.283
,
L.284
,
S.287
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:L.14
,
A:L.22
,
A:V.23
,
A:L.66
,
A:F.70
,
A:L.251
,
A:A.254
,
A:L.284
Hydrogen bonds:
A:Y.150
,
A:L.283
,
A:S.287
,
A:S.287
Water bridges:
A:R.257
,
A:H.288
Salt bridges:
A:R.257
MYR.2:
11 residues within 4Å:
Chain A:
S.342
,
V.344
,
R.348
,
P.384
,
L.387
,
I.388
,
N.391
,
L.430
,
L.453
,
R.485
Ligands:
MYR.3
8
PLIP interactions
:
8 interactions with chain A
Hydrophobic interactions:
A:V.344
,
A:L.387
,
A:I.388
,
A:L.430
,
A:L.453
Hydrogen bonds:
A:S.342
Salt bridges:
A:R.348
,
A:R.485
MYR.3:
15 residues within 4Å:
Chain A:
L.387
,
N.391
,
R.410
,
Y.411
,
V.415
,
V.426
,
L.430
,
L.453
,
L.457
,
L.460
,
V.473
,
F.488
,
S.489
,
L.491
Ligands:
MYR.2
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:Y.411
,
A:Y.411
,
A:Y.411
,
A:V.415
,
A:V.426
,
A:L.430
,
A:L.453
,
A:L.457
,
A:L.460
,
A:V.473
,
A:F.488
,
A:F.488
,
A:L.491
Hydrogen bonds:
A:N.391
,
A:R.410
,
A:S.489
MYR.4:
10 residues within 4Å:
Chain A:
Y.401
,
F.502
,
F.507
,
K.525
,
A.528
,
L.529
,
L.532
,
V.547
,
F.551
,
L.575
10
PLIP interactions
:
10 interactions with chain A
Hydrophobic interactions:
A:F.502
,
A:F.507
,
A:A.528
,
A:L.532
,
A:V.547
,
A:F.551
,
A:F.551
,
A:L.575
Hydrogen bonds:
A:Y.401
Salt bridges:
A:K.525
1 x
EVP
:
(5S,5AR,8AR,9R)-9-(4-HYDROXY-3,5-DIMETHOXYPHENYL)-8-OXO-5,5A,6,8,8A,9-HEXAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-5-YL 4,6-O-[(1R)-ETHYLIDENE]-BETA-D-GLUCOPYRANOSIDE
(Non-covalent)
EVP.5:
11 residues within 4Å:
Chain A:
D.108
,
H.146
,
Y.148
,
S.193
,
R.197
,
C.200
,
A.201
,
Q.204
,
C.246
,
H.247
,
G.248
7
PLIP interactions
:
7 interactions with chain A
Hydrogen bonds:
A:S.193
,
A:R.197
,
A:Q.204
,
A:H.247
Water bridges:
A:D.108
,
A:D.108
Salt bridges:
A:R.197
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Wang, Z.M. et al., Structural studies of several clinically important oncology drugs in complex with human serum albumin. Biochim.Biophys.Acta (2013)
Release Date
2013-07-24
Peptides
SERUM ALBUMIN:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
Export Alignment
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Secondary Structure
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DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
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SERUM ALBUMIN
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4hgk.1
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4k2c.1
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4l8u.1
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4l9k.1
|
4l9k.2
|
4l9q.1
|
4l9q.2
|
4la0.1
|
4la0.2
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4lb2.1
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|
4n0f.1
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Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme