SMTL ID : 8j8e.2 (1 other biounit)

Human serum albumin-palladium(II) agent complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

6 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 8 residues within 4Å: Chain A: R.117, M.123, L.135, Y.138, L.139, A.158, Y.161, F.165 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.135, A:Y.138, A:Y.138, A:L.139, A:A.158, A:Y.161, A:Y.161, A:F.165, A:F.165 Salt bridges: A:R.117 PLM.2: 13 residues within 4Å: Chain A: R.10, L.22, V.23, F.27, V.46, L.66, F.70, Y.150, P.152, A.254, R.257, A.258, S.287 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.23, A:F.27, A:V.46, A:L.66, A:F.70, A:P.152, A:A.254 Hydrogen bonds: A:Y.150, A:S.287 Water bridges: A:S.287, A:S.287 Salt bridges: A:R.257 PLM.3: 12 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, L.387, I.388, N.391, G.434, M.446, L.453, R.485 Ligands: PLM.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.344, A:L.387, A:N.391 Hydrogen bonds: A:S.342 Salt bridges: A:R.348, A:R.485 PLM.4: 9 residues within 4Å: Chain A: Y.411, V.418, L.457, L.460, L.463, H.464, F.488, S.489 Ligands: PLM.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:V.418, A:L.457, A:L.460, A:L.460, A:H.464, A:F.488 Hydrogen bonds: A:Y.411, A:S.489 Salt bridges: A:R.410 PLM.5: 7 residues within 4Å: Chain A: Y.401, F.502, F.507, K.525, H.535, M.548, F.551 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.502, A:F.507, A:F.507, A:F.551 Salt bridges: A:K.525 PLM.6: 4 residues within 4Å: Chain A: R.209, A.210, D.324, L.331 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.210

1 x U5U: ~{N},~{N}-dimethyl-7-phenyl-3-thia-1$l^{4},5,6$l^{4}-triaza-2$l^{3}-palladatricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine

U5U.7: 12 residues within 4Å: Chain A: K.199, W.214, R.218, L.219, L.238, V.241, H.242, R.257, L.260, I.264, S.287, I.290 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:V.241, A:R.257, A:L.260, A:I.264, A:I.290, A:I.290 Metal complexes: A:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z.L. et al., Structure of human serum albumin palladium(II) agent complex. To Be Published

Release Date

2024-05-01

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Serum albumin

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