SMTL ID : 7d6j.1 (1 other biounit)

Human serum albumin complexed with benzbromarone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

monomer

Ligands

4 x R75: [3,5-bis(bromanyl)-4-oxidanyl-phenyl]-(2-ethyl-1-benzofuran-3-yl)methanone(Non-covalent)

R75.1: 11 residues within 4Å: Chain A: L.387, I.388, N.391, F.403, Y.411, L.430, V.433, A.449, L.453, R.485, F.488 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.387, A:I.388, A:V.433, A:A.449, A:L.453 Hydrogen bonds: A:Y.411 R75.2: 10 residues within 4Å: Chain A: Y.150, K.199, R.218, L.219, R.222, L.238, H.242, R.257, I.290, A.291 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.219, A:R.222, A:L.238, A:L.238 Hydrogen bonds: A:Y.150, A:Y.150, A:R.257 pi-Stacking: A:W.214 pi-Cation interactions: A:K.199 R75.3: 12 residues within 4Å: Chain A: L.115, P.118, M.123, F.134, Y.138, E.141, I.142, Y.161, L.182, D.183, R.186 Ligands: R75.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.115, A:P.118, A:F.134, A:E.141, A:I.142, A:L.182 Hydrogen bonds: A:Y.161 pi-Stacking: A:Y.138 Halogen bonds: A:L.115 R75.4: 10 residues within 4Å: Chain A: Y.138, I.142, R.145, Y.161, L.182, L.185, R.186, G.189, K.190 Ligands: R75.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.142, A:I.142, A:Y.161, A:L.182, A:L.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamasaki, K. et al., Interaction of Benzbromarone with Subdomains IIIA and IB/IIA on Human Serum Albumin as the Primary and Secondary Binding Regions. Mol Pharm. (2021)

Release Date

2021-02-03

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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