SMTL ID : 4z69.1 (1 other biounit)

Human serum albumin complexed with palmitic acid and diclofenac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

3 x F15: PENTADECANOIC ACID(Non-covalent)

F15.1: 7 residues within 4Å: Chain A: R.117, Y.138, A.158, Y.161, F.165, R.186 Ligands: DIF.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.117, A:Y.138, A:A.158, A:Y.161, A:Y.161, A:Y.161, A:Y.161, A:F.165 Salt bridges: A:R.117, A:R.186 F15.3: 11 residues within 4Å: Chain A: S.342, V.344, L.345, R.348, L.387, G.434, M.446, A.449, L.453, R.485 Ligands: PLM.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.344, A:L.387, A:A.449 Hydrogen bonds: A:S.342, A:L.345 Salt bridges: A:R.348, A:R.485 F15.5: 13 residues within 4Å: Chain A: Y.401, F.502, F.507, K.525, A.528, L.532, H.535, V.547, M.548, F.551, A.552, V.576, S.579 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.502, A:F.507, A:F.507, A:A.528, A:L.532, A:L.532, A:V.547, A:F.551, A:F.551, A:V.576 Salt bridges: A:K.525

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 13 residues within 4Å: Chain A: V.46, L.66, L.69, F.70, Y.150, P.152, L.251, A.254, R.257, A.258, L.283, L.284, S.287 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.46, A:L.66, A:L.69, A:F.70, A:P.152, A:L.251, A:L.284 Hydrogen bonds: A:S.287 Water bridges: A:L.283, A:S.287, A:S.287, A:H.288 Salt bridges: A:R.257 PLM.4: 11 residues within 4Å: Chain A: R.410, Y.411, V.418, T.422, L.430, L.457, L.460, H.464, F.488, S.489 Ligands: F15.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:Y.411, A:V.418, A:L.430, A:L.457, A:L.460, A:L.460, A:H.464, A:F.488, A:F.488 Hydrogen bonds: A:S.489 Salt bridges: A:R.410, A:K.414

3 x DIF: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID(Non-covalent)

DIF.6: 10 residues within 4Å: Chain A: I.142, H.146, F.149, L.154, Y.161, L.185, R.186, G.189, K.190 Ligands: F15.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.142, A:I.142, A:F.149, A:F.149, A:L.154, A:R.186 Hydrogen bonds: A:R.186 pi-Stacking: A:H.146 DIF.7: 9 residues within 4Å: Chain A: K.199, W.214, R.218, L.219, R.222, L.260, I.264, S.287, A.291 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.218, A:L.219, A:L.260 Salt bridges: A:K.199, A:R.218 DIF.8: 12 residues within 4Å: Chain A: K.199, S.202, L.203, F.206, G.207, A.210, F.211, W.214, V.344, S.480, L.481, V.482 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.206, A:F.211, A:F.211, A:V.344, A:L.481, A:V.482 Hydrogen bonds: A:S.480

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural basis of non-steroidal anti-inflammatory drug diclofenac binding to human serum albumin. Chem.Biol.Drug Des. (2015)

Release Date

2016-01-27

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

Related Entries With Identical Sequence