SMTL ID : 5ifo.1

X-ray structure of HSA-Myr-KP1019

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

2 x RU: RUTHENIUM ION(Non-covalent)

RU.1: 2 residues within 4Å: Chain A: H.146, K.190 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.146, H2O.1, H2O.1, H2O.1, H2O.1 RU.2: 2 residues within 4Å: Chain A: K.199, H.242 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.242, H2O.1, H2O.1, H2O.1, H2O.1

6 x MYR: MYRISTIC ACID(Non-covalent)

MYR.3: 10 residues within 4Å: Chain A: L.115, R.117, M.123, L.135, Y.138, L.139, L.154, A.158, Y.161, F.165 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.117, A:L.135, A:Y.138, A:Y.138, A:L.139, A:L.154, A:A.158, A:Y.161, A:Y.161, A:Y.161, A:F.165 Hydrogen bonds: A:L.115 Salt bridges: A:R.117 MYR.4: 11 residues within 4Å: Chain A: R.10, L.14, L.22, V.23, L.66, Y.150, L.251, A.254, L.283, L.284, S.287 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.14, A:L.22, A:V.23, A:L.66, A:L.251, A:A.254, A:L.284 Hydrogen bonds: A:Y.150, A:S.287, A:S.287 Salt bridges: A:R.257 MYR.5: 11 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, L.387, I.388, N.391, M.446, A.449, L.453, R.485 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.344, A:P.384, A:L.387, A:I.388, A:A.449 Hydrogen bonds: A:S.342 Salt bridges: A:R.348, A:R.485 MYR.6: 9 residues within 4Å: Chain A: L.387, Y.411, V.426, L.430, L.453, L.457, L.460, F.488, S.489 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.411, A:V.426, A:L.430, A:L.453, A:L.457, A:F.488, A:F.488 Hydrogen bonds: A:Y.411, A:Y.411 Salt bridges: A:R.410, A:K.414 MYR.7: 10 residues within 4Å: Chain A: Y.401, K.402, N.405, F.507, F.509, K.525, L.532, V.547, M.548, S.579 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.509, A:K.525, A:K.525, A:L.532, A:L.532, A:V.547 Salt bridges: A:K.402, A:K.525 MYR.8: 7 residues within 4Å: Chain A: R.209, A.213, D.324, L.327, L.331, K.351, E.354 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.327, A:L.331 Salt bridges: A:R.209, A:K.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bijelic, A. et al., X-ray Structure Analysis of Indazolium trans-[Tetrachlorobis(1H-indazole)ruthenate(III)] (KP1019) Bound to Human Serum Albumin Reveals Two Ruthenium Binding Sites and Provides Insights into the Drug Binding Mechanism. J.Med.Chem. (2016)

Release Date

2016-06-01

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

Related Entries With Identical Sequence