SMTL ID : 4z69.2 (1 other biounit)

Human serum albumin complexed with palmitic acid and diclofenac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

3 x F15: PENTADECANOIC ACID(Non-covalent)

F15.1: 7 residues within 4Å: Chain A: L.115, R.117, Y.138, A.158, Y.161, F.165, R.186 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.117, A:Y.138, A:Y.138, A:Y.161, A:Y.161, A:Y.161, A:F.165 Hydrogen bonds: A:L.115 Water bridges: A:R.117 Salt bridges: A:R.117 F15.3: 14 residues within 4Å: Chain A: S.342, V.344, L.345, R.348, P.384, L.387, I.388, L.430, G.434, M.446, A.449, L.453, R.485 Ligands: PLM.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.344, A:P.384, A:L.387, A:L.387, A:I.388, A:A.449 Hydrogen bonds: A:S.342, A:S.342, A:L.345 Salt bridges: A:R.348, A:R.485 F15.5: 12 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, A.528, L.532, H.535, M.548, F.551, V.576, S.579, Q.580 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.507, A:K.525, A:A.528, A:F.551, A:V.576, A:Q.580 Hydrogen bonds: A:Y.401, A:N.405 Salt bridges: A:K.525

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 12 residues within 4Å: Chain A: L.22, V.46, L.66, F.70, Y.150, P.152, A.254, R.257, A.258, L.283, L.284, S.287 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.22, A:V.46, A:L.66, A:F.70, A:F.70, A:P.152, A:L.284 Hydrogen bonds: A:Y.150, A:S.287 Water bridges: A:R.257, A:H.288 Salt bridges: A:R.257 PLM.4: 11 residues within 4Å: Chain A: L.387, Y.411, K.414, V.418, T.422, L.457, L.460, H.464, F.488, S.489 Ligands: F15.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.411, A:Y.411, A:Y.411, A:V.418, A:V.418, A:L.457, A:L.460, A:L.460, A:H.464, A:F.488, A:F.488 Hydrogen bonds: A:Y.411, A:Y.411 Salt bridges: A:R.410, A:K.414

1 x DIF: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID(Non-covalent)

DIF.6: 11 residues within 4Å: Chain A: K.199, W.214, R.218, R.222, F.223, R.257, L.260, I.264, S.287, I.290, A.291 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.222, A:F.223, A:L.260 Salt bridges: A:K.199, A:R.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural basis of non-steroidal anti-inflammatory drug diclofenac binding to human serum albumin. Chem.Biol.Drug Des. (2015)

Release Date

2016-01-27

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Serum albumin

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