SMTL ID : 8ew4.1

Human Serum Albumin with Cobalt (II) and Myristic Acid - crystal 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 2 residues within 4Å: Chain A: D.1, H.9 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.1, A:D.1, A:H.9, H2O.1, H2O.6 CO.2: 1 residues within 4Å: Chain A: H.128 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.128, H2O.5, H2O.6 CO.3: 1 residues within 4Å: Chain A: D.471 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.471, H2O.6, H2O.6 CO.4: 1 residues within 4Å: Chain A: E.244 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.244, H2O.7, H2O.7, H2O.7

10 x MYR: MYRISTIC ACID(Non-covalent)

MYR.5: 12 residues within 4Å: Chain A: R.117, M.123, L.135, Y.138, L.139, I.142, L.154, A.158, Y.161, F.165, R.186 Ligands: MYR.14 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.117, A:Y.138, A:Y.138, A:Y.138, A:L.139, A:I.142, A:Y.161, A:Y.161, A:Y.161, A:F.165 Salt bridges: A:R.117, A:R.186 MYR.6: 13 residues within 4Å: Chain A: R.10, L.22, V.23, A.26, Y.30, L.66, H.67, F.70, N.99, D.249, L.250, L.251, A.254 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.22, A:L.22, A:V.23, A:A.26, A:L.66, A:L.66, A:F.70, A:F.70, A:L.250, A:L.251, A:L.251 Hydrogen bonds: A:R.10 MYR.7: 13 residues within 4Å: Chain A: S.342, V.344, R.348, P.384, L.387, I.388, L.430, V.433, G.434, E.450, L.453, R.485 Ligands: MYR.8 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.344, A:L.387, A:I.388, A:L.430, A:V.433, A:E.450, A:L.453 Hydrogen bonds: A:S.342 Salt bridges: A:R.348, A:R.485 MYR.8: 10 residues within 4Å: Chain A: L.387, Y.411, V.418, L.423, L.430, L.457, L.460, F.488, S.489 Ligands: MYR.7 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.387, A:Y.411, A:Y.411, A:V.418, A:L.423, A:L.457, A:L.460, A:L.460, A:F.488, A:F.488 Hydrogen bonds: A:Y.411, A:Y.411 Salt bridges: A:R.410 MYR.9: 12 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, L.529, L.532, H.535, M.548, F.551, L.575, S.579, Q.580 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.507, A:F.507, A:L.529, A:L.532, A:F.551, A:F.551, A:L.575, A:Q.580 Hydrogen bonds: A:N.405 Salt bridges: A:K.525 MYR.10: 11 residues within 4Å: Chain A: R.209, A.210, K.212, A.213, V.216, D.324, L.327, L.347, A.350, E.354, S.480 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.213, A:L.327, A:L.347, A:A.350 Hydrogen bonds: A:K.212 Salt bridges: A:K.212 MYR.11: 11 residues within 4Å: Chain A: Y.150, Q.196, L.238, V.241, H.242, C.245, R.257, L.260, I.290, A.291 Ligands: MYR.12 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.238, A:R.257, A:L.260, A:I.290, A:A.291 Water bridges: A:R.257 Salt bridges: A:R.257 MYR.12: 9 residues within 4Å: Chain A: L.198, K.199, S.202, F.211, W.214, L.238, H.242, S.454 Ligands: MYR.11 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.198, A:F.211, A:F.211, A:W.214, A:W.214, A:L.238, A:L.238 Hydrogen bonds: A:S.454 Water bridges: A:R.218 Salt bridges: A:K.195, A:K.199 MYR.13: 6 residues within 4Å: Chain A: D.108, Y.148, S.193, Q.196, R.197, C.246 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.148, A:Q.196, A:R.197 Hydrogen bonds: A:D.108 Salt bridges: A:R.197 MYR.14: 8 residues within 4Å: Chain A: I.142, H.146, F.149, Y.161, R.186, G.189, K.190 Ligands: MYR.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.142, A:I.142, A:F.149, A:F.149, A:R.186, A:K.190 Salt bridges: A:H.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, D. et al., Structural and biochemical characterisation of Co2+-binding sites on serum albumins and their interplay with fatty acids. Chem Sci (2023)

Release Date

2022-11-09

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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