SMTL ID : 6wuw.1 (1 other biounit)

Crystal structure of Human Serum Albumin complex with JMS-053

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

4 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 13 residues within 4Å: Chain A: S.342, V.344, R.348, L.387, I.388, N.391, L.430, V.433, G.434, A.449, E.450, L.453, R.485 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.344, A:L.387, A:I.388, A:V.433, A:E.450, A:L.453 Hydrogen bonds: A:S.342, A:S.342 Salt bridges: A:R.348, A:R.485 MYR.5: 6 residues within 4Å: Chain A: R.209, A.213, D.324, L.327, G.328, E.354 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.213, A:L.327 Hydrogen bonds: A:D.324 MYR.9: 14 residues within 4Å: Chain A: R.10, L.14, F.19, L.22, Y.150, P.152, L.250, L.251, A.254, R.257, A.258, L.283, L.284, S.287 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.14, A:F.19, A:L.22, A:P.152, A:L.250, A:L.251, A:A.254, A:R.257, A:A.258, A:L.283 Hydrogen bonds: A:Y.150, A:L.283, A:S.287, A:S.287 Water bridges: A:H.288, A:H.288 Salt bridges: A:R.257 MYR.10: 9 residues within 4Å: Chain A: Y.401, N.405, F.507, K.525, A.528, L.532, V.547, M.548, S.579 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.507, A:F.507, A:K.525, A:A.528, A:L.532, A:V.547 Hydrogen bonds: A:Y.401, A:Y.401 Salt bridges: A:K.525

1 x UAY: 7-imino-2-phenylthieno[3,2-c]pyridine-4,6(5H,7H)-dione(Non-covalent)

UAY.2: 11 residues within 4Å: Chain A: L.115, I.142, H.146, F.149, L.154, F.157, Y.161, R.186, G.189, K.190 Ligands: UNL.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.142, A:I.142, A:F.149, A:L.154, A:F.157 Hydrogen bonds: A:K.190 pi-Stacking: A:F.157

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 8 residues within 4Å: Chain A: L.219, L.238, V.241, H.242, I.264, S.287, I.290, A.291 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.242

1 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Non-covalent)

OCA.4: 8 residues within 4Å: Chain A: Y.411, V.415, L.430, L.453, L.457, L.460, R.485, F.488 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.411, A:V.415, A:L.430, A:L.457, A:L.460, A:F.488, A:F.488

1 x UNL: UNKNOWN LIGAND(Non-covalent)

UNL.6: 12 residues within 4Å: Chain A: R.117, M.123, F.134, L.135, Y.138, L.139, I.142, L.154, A.158, Y.161, F.165 Ligands: UAY.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.117, A:R.117

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: S.202, F.211, W.214, L.481 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.202 EDO.8: 4 residues within 4Å: Chain A: C.124, F.127, H.128, C.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czub, M.P. et al., Structure of the Complex of an Iminopyridinedione Protein Tyrosine Phosphatase 4A3 Phosphatase Inhibitor with Human Serum Albumin. Mol.Pharmacol. (2020)

Release Date

2020-05-20

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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